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. Author manuscript; available in PMC: 2018 Apr 30.
Published in final edited form as: Nat Methods. 2017 Oct 30;14(12):1141–1152. doi: 10.1038/nmeth.4473

Table 2. Segmentation strategies used by the competing methods.

Principle, Feature, and Methodology used in the segmentation phase of the competing algorithms (following the taxonomy shown in Fig. 3) along with the preprocessing and postprocessing strategies employed.

Algorithm Preprocessing Principle Feature Methodology Postprocessing
COM-US Noise suppression
Intensity normalization
Homogeneity Intensity Thresholding Size filtering
CUL-UK Noise suppression
Illumination correction
Homogeneity Intensity Thresholding Size filtering
CUNI-CZ Noise suppression Homogeneity Intensity Thresholding Size filtering
Cluster separation
FR-Be-GE Intensity normalization
Illumination correction
Homogeneity
Boundary
Intensity Energy minimization Size filtering
Hole filling
FR-Ro-GE Intensity normalization
Illumination correction
Homogeneity Texture descriptor Machine learning None
HD-Har-GE Noise suppression
Intensity clipping
Homogeneity Intensity Thresholding Hole filling
Cluster separation
HD-Hau-GE None Homogeneity Texture descriptor Machine learning Size filtering
IMCB-SG (1) Noise suppression
Illumination correction
Homogeneity Intensity Thresholding Size filtering
Cluster separation
IMCB-SG (2) Image resampling
Noise suppression
Illumination correction
Homogeneity Intensity Thresholding Size filtering
Cluster separation
KIT-GE Noise suppression Homogeneity Local descriptor Thresholding None
KTH-SE (1) Intensity normalization
Noise suppression
Illumination correction
Homogeneity Intensity Thresholding Size filtering
Hole filling
Cluster separation
KTH-SE (2) Intensity normalization
Noise suppression
Illumination correction
Homogeneity Intensity Thresholding Size filtering
Hole filling
Cluster separation
KTH-SE (3) Intensity normalization
Illumination correction
Homogeneity Local descriptor Thresholding Boundary Refinement
KTH-SE (4) Intensity normalization
Noise suppression
Boundary Intensity Thresholding Size filtering
Region merging
LEID-NL Noise suppression Homogeneity Intensity Energy minimization Cluster separation
MU-CZ Noise suppression Homogeneity Intensity Energy minimization Cluster separation
NOTT-UK Intensity normalization Homogeneity Intensity Thresholding None
PAST-FR Intensity normalization
Noise suppression
Homogeneity
Boundary
Intensity Energy minimization None
UP-PT Image subsampling
Noise suppression
Homogeneity
Peak
Intensity Thresholding Boundary refinement
UPM-ES Noise suppression Homogeneity Intensity Thresholding Size filtering
Hole filling
Boundary refinement
UZH-CH Intensity normalization
Noise suppression
Illumination correction
Homogeneity Intensity Region growing Size filtering
Hole filling