Table 2. cis regulatory genes within 10 kbs up/down stream of differentially expressed lncRNAs.
| lncRNA | Chr | lncRNA Start | lncRNA End | Gene symbol | Gene Start | Gene End | Up/down stream | Gene title |
|---|---|---|---|---|---|---|---|---|
| Rian | chr12 | 109603945 | 109661711 | Rtl1 | 109589192 | 109600330 | Upstream | retrotransposon-like 1 (Rtl1) |
| Pvt1 | chr15 | 62037986 | 62250976 | Z11981 | 62176887 | 62180977 | Overlap | M.musculus Pvt-1 mRNA |
| Meg3 | chr12 | 109545398 | 109568650 | NA | NA | NA | NA | NA |
| 2900097C17Rik | chr2 | 156388063 | 156392979 | NA | NA | NA | NA | NA |
| 1700020I14Rik | chr2 | 119594296 | 119600744 | Chp1 | 119547706 | 119587022 | Upstream | calcineurin-like EF hand protein 1 (Chp1) |
| 1700020I14Rik | chr2 | 119594296 | 119600744 | Oip5 | 119609531 | 119618505 | Downstream | Opa interacting protein 5 (Oip5) |
Note: NA, not available.