Table 1.
The coding genes of carotenoid synthases identified in cottons. Enzymes are abbreviated as in Supplementary Fig. S1. Genes are named alphabetically according to their IDs in G. raimondii, and homeologs annotated in different genomes (D5, A2, Dt1 and At1) are list in the same line.
| Enzymes | Genes | G. raimondii (D5) | G. arboreum (A2) | G. hirsutum-Dt1 | G. hirsutum-At1 |
|---|---|---|---|---|---|
| DXS | GoDXS1 | Gorai.004G030400 | Cotton_A_06764 | — | — |
| GoDXS2 | Gorai.004G030800 | Cotton_A_06768 | — | — | |
| GoDXS3 | Gorai.004G030900 | Cotton_A_06769 | Gh_D08G0270 | Gh_A08G0193 | |
| GoDXS4 | Gorai.004G111100 | Cotton_A_21777 | Gh_D08G1005 | Gh_A08G2461 | |
| GoDXS5 | Gorai.008G093600 | Cotton_A_31168 | Gh_D12G2793 | Gh_A12G0784 | |
| GoDXS6 | Gorai.011G184200 | Cotton_A_39687 | Gh_D10G1640 | Gh_A10G2292 | |
| IDI | GoIDI1 | Gorai.004G262800 | Cotton_A_05787 | Gh_D08G2391 | Gh_A08G1997 |
| GGPS | GoGGPS1 | Gorai.002G251300 | Cotton_A_00433 | Gh_D01G2110 | Gh_A01G1866 |
| GoGGPS2 | Gorai.002G251400 | — | — | — | |
| GoGGPS3 | Gorai.005G054800 | — | — | — | |
| GoGGPS4 | Gorai.005G120800 | — | — | — | |
| GoGGPS5 | Gorai.007G051300 | Cotton_A_02023 | Gh_D11G0475 | — | |
| GoGGPS6 | Gorai.007G206700 | Cotton_A_32196 | Gh_D11G1883 | Gh_A11G1725 | |
| GoGGPS7 | Gorai.011G102700 | Cotton_A_17013 | Gh_D10G0907 | Gh_A10G0844 | |
| GoGGPS8 | Gorai.011G102800 | — | — | — | |
| GoGGPS9 | Gorai.011G103000 | — | — | — | |
| GoGGPS10 | Gorai.011G133100 | — | — | — | |
| PSY | GoPSY1 | Gorai.001G083700 | Cotton_A_12202 | Gh_D07G0746 | Gh_A07G0668 |
| GoPSY2 | Gorai.006G009400 | Cotton_A_14731 | Gh_D09G0078 | Gh_A09G0080 | |
| GoPSY3 | Gorai.010G126900 | Cotton_A_36110 | Gh_D06G1167 | Gh_A06G0932 | |
| GoPSY4 | Gorai.012G039100 | Cotton_A_29856 | Gh_D04G0308 | Gh_A05G3296 | |
| PDS | GoPDS1 | Gorai.011G149900 | Cotton_A_36228 | Gh_D10G1327 | Gh_A10G1167 |
| ZISO | GoZISO1 | Gorai.005G080900 | Cotton_A_34612 | Gh_D02G0721 | Gh_A02G0673 |
| ZDS | GoZDS1 | Gorai.007G284900 | Cotton_A_14988 | Gh_D11G2616 | Gh_A11G2306 |
| GoZDS2 | Gorai.013G201600 | Cotton_A_12871 | Gh_D13G1826 | Gh_A13G1497 | |
| CrtISO | GoCrtISO1 | Gorai.002G153800 | Cotton_A_34115 | Gh_D01G1197 | Gh_A01G1122 |
| GoCrtISO2 | Gorai.002G218000 | Cotton_A_27012 | Gh_D01G1808 | Gh_A01G1557 | |
| LCY-β | GoLCYB1 | Gorai.006G113300 | Cotton_A_26267 | Gh_D09G0946 | Gh_A09G0916 |
| GoLCYB2 | Gorai.013G002400 | Cotton_A_20533 | Gh_D13G0026 | Gh_A13G0010 | |
| LCY-ε | GoLCYE1 | Gorai.001G012900 | Cotton_A_05719 | Gh_D07G2366 | Gh_A07G0117 |
| GoLCYE2 | Gorai.009G032900 | Cotton_A_09351 | Gh_D05G0313 | Gh_A05G0229 | |
| CHY-β | GoCHYB1 | Gorai.006G199400 | Cotton_A_27296 | Gh_D09G1728 | Gh_A09G1634 |
| GoCHYB2 | Gorai.008G249600 | Cotton_A_32712 | Gh_D12G2438 | Gh_A12G2678 | |
| GoCHYB3 | Gorai.008G274800 | Cotton_A_01286 | — | Gh_A12G2302 | |
| CHY-ε | GoCHYE1 | Gorai.007G372200 | Cotton_A_05513 | Gh_D11G3263 | Gh_A11G2878 |
| GoCHYE2 | Gorai.013G180200 | Cotton_A_26341 | Gh_D13G1644 | Gh_A13G1336 | |
| ZEP | GoZEP1 | Gorai.007G213500 | Cotton_A_24363 | Gh_D11G3469 | Gh_A11G1774 |
| VDE | GoVDE1 | Gorai.007G268500 | Cotton_A_18131 | Gh_D11G2473 | Gh_A11G2173 |