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. 2018 Jan 22;15:10. doi: 10.1186/s12977-018-0394-5

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© The Author(s) 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Coverage of the region surrounding the MuLV env gene splice acceptor. Bar plots show the number of 5′ read ends (with + 12 nt offset) mapped to viral RNA in RiboSeq HAR, RiboSeq CHX and RNASeq libraries generated from Rat2 cell infections, in reads per million (RPM). Blue, green and orange bars correspond to reads mapping in phases 0, + 1 and + 2, respectively, relative to the env ORF. Translation of env-uORF-1 and env-uORF-2 is initiated from CUG codons that coincide with large peaks in RiboSeq HAR data