Skip to main content
. 2018 Jan 22;19:70. doi: 10.1186/s12864-018-4437-z

Table 7.

GO terms in down-regulated DEGs that showed specific enrichment to A. stolonifera

GO ID Ontology Term Level ID Annotation Log2 FC in A. stolonifera
GO:0010132 biological_process dhurrin biosynthetic process 10 TRINITY_DN102712_c0_g3 4-hydroxyphenylacetaldehyde oxime monooxygenase −2.23
TRINITY_DN101496_c0_g2 4-hydroxyphenylacetaldehyde oxime monooxygenase −2.35
TRINITY_DN107273_c0_g1 Cyanohydrin beta-glucosyltransferase −2.52
GO:0006535 biological_process cysteine biosynthetic process from serine 10 TRINITY_DN111995_c9_g3 Serine hydroxymethyltransferase 1 −1.36
TRINITY_DN108518_c2_g18 Cysteine synthase −1.45
GO:0006563 biological_process L-serine metabolic process 6 TRINITY_DN112384_c6_g19 Serine hydroxymethyltransferase 1 −1.53
TRINITY_DN111995_c9_g15 Serine hydroxymethyltransferase 1 −1.55
GO:0006544 biological_process glycine metabolic process 6 TRINITY_DN114224_c3_g11 Cysteine synthase −1.76
TRINITY_DN111631_c4_g1 Serine acetyltransferase 2 −1.79
GO:0030170 molecular_function pyridoxal phosphate binding 2 TRINITY_DN111901_c2_g2 Serine acetyltransferase 2 −1.83
TRINITY_DN108545_c1_g2 Cysteine synthase −2.00
TRINITY_DN111995_c9_g3 Serine hydroxymethyltransferase 1 −1.36
TRINITY_DN112384_c6_g19 Serine hydroxymethyltransferase 1 −1.53
TRINITY_DN111995_c9_g15 Serine hydroxymethyltransferase 1 −1.55
TRINITY_DN104761_c8_g8 Glutamate--glyoxylate aminotransferase 1 −1.86
TRINITY_DN105135_c11_g1 Glutamate--glyoxylate aminotransferase 1 −1.91
TRINITY_DN108881_c1_g1 Aminomethyltransferase −2.03
TRINITY_DN89720_c3_g1 Glycine cleavage system H protein −2.30
TRINITY_DN88310_c1_g1 Glycine cleavage system H protein −2.49
GO:0004345 molecular_function glucose-6-phosphate dehydrogenase activity 1 TRINITY_DN106237_c1_g1 Glucose-6-phosphate 1-dehydrogenase 1 −1.71
GO:0006006 biological_process glucose metabolic process 3 TRINITY_DN110605_c3_g2 Glucose-6-phosphate 1-dehydrogenase 1 −1.73
GO:0050661 molecular_function NADP binding 2 TRINITY_DN104972_c0_g1 Phosphoglucomutase −1.73
TRINITY_DN117464_c1_g8 Glucose-6-phosphate 1-dehydrogenase 1 −1.74
TRINITY_DN107111_c2_g2 Glucose-6-phosphate 1-dehydrogenase 1 −1.94
TRINITY_DN92321_c0_g3 Glucose-6-phosphate 1-dehydrogenase 1 −1.97
TRINITY_DN110467_c12_g1 Glyceraldehyde-3-phosphate dehydrogenase A −2.59
TRINITY_DN108728_c4_g8 Glyceraldehyde-3-phosphate dehydrogenase B −2.78
TRINITY_DN110467_c13_g13 Glyceraldehyde-3-phosphate dehydrogenase A −2.90
TRINITY_DN108728_c4_g45 Glyceraldehyde-3-phosphate dehydrogenase A −3.09
GO:0006098 biological_process pentose-phosphate shunt 11 TRINITY_DN106239_c5_g3 Photosystem II stability/assembly factor HCF136 −1.34
TRINITY_DN104836_c5_g8 Glutamine synthetase −1.37
TRINITY_DN115697_c0_g2 Acetyltransferase NSI −1.63
TRINITY_DN103999_c8_g1 Glutamine synthetase −1.64
TRINITY_DN106237_c1_g1 Glucose-6-phosphate 1-dehydrogenase 1 −1.71
TRINITY_DN110605_c3_g2 Glucose-6-phosphate 1-dehydrogenase 1 −1.73
TRINITY_DN111792_c1_g5 Ribulose-phosphate 3-epimerase −1.86
TRINITY_DN107111_c2_g2 Glucose-6-phosphate 1-dehydrogenase 1 −1.94
TRINITY_DN92321_c0_g3 Glucose-6-phosphate 1-dehydrogenase 1 −1.97
TRINITY_DN111792_c1_g12 Ribulose-phosphate 3-epimerase −2.01
TRINITY_DN115720_c2_g1 Ribose-5-phosphate isomerase 3 −2.20
GO:0004601 molecular_function peroxidase activity 2 TRINITY_DN110325_c0_g1 Uncharacterized protein At1g32220, chloroplastic −1.11
GO:0006979 biological_process response to oxidative stress 1 TRINITY_DN114953_c0_g1 UV-B-induced protein At3g17800, chloroplastic −1.22
GO:0042744 biological_process hydrogen peroxide catabolic process 3 TRINITY_DN98249_c0_g3 Thioredoxin F −1.22
TRINITY_DN100788_c0_g1 Glyoxylate/succinic semialdehyde reductase 1 −1.34
TRINITY_DN115073_c1_g1 Cryptochrome-1 −1.36
TRINITY_DN97981_c0_g1 Phospholipid hydroperoxide glutathione peroxidase 1 −1.40
TRINITY_DN94618_c1_g1 Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic −1.50
TRINITY_DN98459_c0_g1 Chromophore lyase CRL −1.54
TRINITY_DN95499_c1_g3 Phospholipid hydroperoxide glutathione peroxidase 1 −1.55
TRINITY_DN101976_c5_g1 Photosynthetic NDH subunit of subcomplex B 5 −1.58
TRINITY_DN106585_c0_g6 Thioredoxin reductase NTRC −1.59
TRINITY_DN102867_c2_g1 Peroxidase 50 −1.62
TRINITY_DN114075_c0_g1 BTB/POZ and TAZ domain-containing protein 3 −1.81
TRINITY_DN106929_c2_g1 BTB/POZ and TAZ domain-containing protein 2 −1.91
TRINITY_DN100903_c0_g1 Thylakoid lumenal 29 kDa protein −1.96
TRINITY_DN100475_c0_g1 Thylakoid lumenal 29 kDa protein −2.10
TRINITY_DN115590_c0_g1 BTB/POZ and TAZ domain-containing protein 4 −2.16
TRINITY_DN106093_c0_g1 Peroxidase −2.58
TRINITY_DN113217_c1_g1 BTB/POZ and TAZ domain-containing protein 2 −2.65
TRINITY_DN107140_c0_g4 Thioredoxin-like 3–1 −2.84
TRINITY_DN113511_c1_g1 Peroxidase 2 −3.76
TRINITY_DN98542_c3_g1 Peroxidase 54 −4.02
TRINITY_DN96923_c1_g3 Cationic peroxidase SPC4 −4.91
TRINITY_DN95139_c0_g1 Cationic peroxidase SPC4 −6.29
TRINITY_DN100813_c0_g3 Peroxidase 4 −6.93
TRINITY_DN101060_c1_g1 Peroxidase 4 −9.13
GO:0008422 molecular_function beta-glucosidase activity 1 TRINITY_DN110778_c2_g6 Glucan endo-1,3-beta-glucosidase 8 −1.64
TRINITY_DN109548_c0_g2 Beta-glucosidase 10 −1.98
TRINITY_DN112637_c0_g6 Glucan endo-1,3-beta-glucosidase 11 −2.79
TRINITY_DN109199_c4_g1 Beta-glucosidase 33 −2.87
TRINITY_DN115749_c2_g4 Beta-glucosidase 3 −3.89
TRINITY_DN106744_c2_g2 Beta-glucosidase 10 −4.30
TRINITY_DN106744_c2_g5 Beta-glucosidase 12 −4.45
TRINITY_DN98601_c0_g1 Glucan endo-1,3-beta-glucosidase 13 −4.75
TRINITY_DN107872_c3_g1 Glucan endo-1,3-beta-glucosidase 13 −6.01
TRINITY_DN108629_c1_g9 Beta-glucosidase 3 −7.87
TRINITY_DN113597_c1_g1 Beta-glucosidase 3 −8.22
GO:0016859 molecular_function cis-trans isomerase activity 1 TRINITY_DN102435_c1_g1 Peptidyl-prolyl cis-trans isomerase FKBP16–3 −1.19
TRINITY_DN96729_c0_g2 Peptidyl-prolyl cis-trans isomerase FKBP17–2 −1.65
TRINITY_DN94270_c0_g2 Peptidyl-prolyl cis-trans isomerase FKBP18 −2.02
TRINITY_DN97784_c1_g1 Peptidyl-prolyl cis-trans isomerase FKBP16–4 −2.02
TRINITY_DN107032_c0_g1 Peptidyl-prolyl cis-trans isomerase CYP38 −2.13
TRINITY_DN98688_c1_g2 Beta-carotene isomerase D27 −2.42
TRINITY_DN105648_c0_g1 Peptidyl-prolyl cis-trans isomerase CYP37 −2.51
TRINITY_DN100063_c0_g1 Peptidyl-prolyl cis-trans isomerase CYP26–2 −2.88
TRINITY_DN103314_c0_g1 Peptidyl-prolyl cis-trans isomerase CYP37 −3.02
GO:0004760 molecular_function serine-pyruvate transaminase activity 1 TRINITY_DN104761_c8_g8 Glutamate--glyoxylate aminotransferase 1 −1.86
GO:0008453 molecular_function alanine-glyoxylate transaminase activity 1 TRINITY_DN105135_c11_g1 Glutamate--glyoxylate aminotransferase 1 −1.91
GO:0047958 molecular_function glycine:2-oxoglutarate aminotransferase activity 1 TRINITY_DN108610_c12_g11 Serine--glyoxylate aminotransferase −1.95
TRINITY_DN108610_c12_g18 Serine--glyoxylate aminotransferase −2.25
GO:0050281 molecular_function serine-glyoxylate transaminase activity 1
GO:0004781 molecular_function sulfate adenylyltransfer-ase (ATP) activity 1 TRINITY_DN99919_c0_g1 ATP sulfurylase 4 −1.47
TRINITY_DN111733_c0_g1 ATP sulfurylase 2 −2.58
TRINITY_DN111633_c0_g6 ATP sulfurylase 2 −2.64
GO:0004017 molecular_function adenylate kinase activity 2 TRINITY_DN100455_c0_g1 Adenylate kinase 2 −1.35
TRINITY_DN103594_c0_g8 Adenylate kinase 5 −1.57
GO:0006354 biological_process DNA-templated transcription, elongation 12 TRINITY_DN106267_c0_g4 Adenylate kinase 5 −1.68
TRINITY_DN106135_c0_g4 Adenylate kinase 5 −1.72
TRINITY_DN106106_c0_g1 Adenylate kinase 5 −1.87
GO:0004802 molecular_function transketolase activity 1 TRINITY_DN117305_c5_g24 Transketolase −1.39
TRINITY_DN117516_c6_g24 Transketolase −1.46
TRINITY_DN117305_c5_g8 Transketolase −1.81
GO:0047100 molecular_function glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity 1 TRINITY_DN110467_c12_g1 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic −2.59
TRINITY_DN108728_c4_g8 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic −2.78
TRINITY_DN110467_c13_g13 Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic −2.90
TRINITY_DN108728_c4_g45 Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic −3.09
GO:0008891 molecular_function glycolate oxidase activity 1 TRINITY_DN101527_c7_g10 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 −1.21
GO:0009854 biological_process oxidative photosynthetic carbon pathway 4 TRINITY_DN101527_c7_g6 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 −1.29
GO:0010109 biological_process regulation of photosynthesis 4 TRINITY_DN110877_c7_g22 Glycerate dehydrogenase HPR, peroxisomal −1.63
GO:0019048 biological_process modulation by virus of host morphology or physiology 3 TRINITY_DN103470_c9_g13 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 −1.64
GO:0052852 molecular_function very-long-chain-(S)-2-hydroxy-acid oxidase activity 1 TRINITY_DN108661_c4_g28 Glycerate dehydrogenase HPR, peroxisomal −1.75
GO:0052853 molecular_function long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity 1 TRINITY_DN104606_c11_g2 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 −1.79
GO:0052854 molecular_function medium-chain-(S)-2-hydroxy-acid oxidase activity 1 TRINITY_DN101527_c7_g4 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 −2.94
GO:0009658 biological_process chloroplast organization 2 TRINITY_DN112733_c1_g4 Inner membrane protein PPF-1, chloroplastic −1.08
GO:0010027 biological_process thylakoid membrane organization 4 TRINITY_DN120021_c4_g4 Cytochrome c biogenesis protein CCS1, chloroplastic −1.24
GO:0043623 biological_process cellular protein complex assembly 6 TRINITY_DN103959_c1_g2 Zinc finger protein CONSTANS-LIKE 5 −1.27
TRINITY_DN113749_c1_g2 Plastidal glycolate/glycerate translocator 1, chloroplastic −1.33
TRINITY_DN106239_c5_g3 Photosystem II stability/assembly factor HCF136 −1.34
TRINITY_DN94274_c0_g1 Sec-independent protein translocase protein TATC, chloroplastic −1.44
TRINITY_DN94618_c1_g1 Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic −1.50
TRINITY_DN100252_c1_g2 Protein THYLAKOID FORMATION1, chloroplastic −1.53
TRINITY_DN98459_c0_g1 Chromophore lyase CRL −1.54
TRINITY_DN106585_c0_g6 Thioredoxin reductase NTRC −1.59
TRINITY_DN106529_c0_g1 Preprotein translocase subunit SECY, chloroplastic −1.76
GO:0034051 biological_process negative regulation of plant-type hypersensitive response 8 TRINITY_DN82813_c0_g2 RPM1-interacting protein 4 −1.54
TRINITY_DN104137_c0_g2 Protein LSD1 −2.48
TRINITY_DN105439_c0_g2 Protein LSD1 −3.18
TRINITY_DN105439_c0_g1 Protein LSD1 −3.93
GO:0034250 biological_process positive regulation of cellular amide metabolic process 7 TRINITY_DN107506_c3_g2 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic −1.67
GO:0045727 biological_process positive regulation of translation 12 TRINITY_DN109357_c3_g14 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic −2.81
TRINITY_DN109357_c3_g9 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic −2.87
TRINITY_DN109357_c3_g19 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic −4.39
GO:0008266 molecular_function poly(U) RNA binding 2 TRINITY_DN118068_c3_g9 31 kDa ribonucleoprotein, chloroplastic −1.01
TRINITY_DN111995_c9_g3 Serine hydroxymethyltransferase 1 −1.36
TRINITY_DN112384_c6_g19 Serine hydroxymethyltransferase 1 −1.53
TRINITY_DN107506_c3_g2 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic −1.67
GO:0051287 molecular_function NAD binding 2 TRINITY_DN104957_c4_g1 Cytosolic isocitrate dehydrogenase [NADP] −1.02
TRINITY_DN100788_c0_g1 Glyoxylate/succinic semialdehyde reductase 1 −1.34
TRINITY_DN111312_c1_g3 NAD-dependent malic enzyme 1, mitochondrial −1.42
TRINITY_DN111312_c0_g2 NAD-dependent malic enzyme 59 kDa isoform, mitochondrial −1.51
TRINITY_DN110877_c7_g22 Glycerate dehydrogenase HPR, peroxisomal −1.63
TRINITY_DN108661_c4_g28 Glycerate dehydrogenase HPR, peroxisomal −1.75
TRINITY_DN110977_c0_g2 Isocitrate dehydrogenase [NADP] −1.78
GO:0010181 molecular_function FMN binding 4 TRINITY_DN101527_c7_g10 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 −1.21
TRINITY_DN86676_c0_g1 NAD(P)H dehydrogenase (quinone) FQR1 −1.27
TRINITY_DN101527_c7_g6 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 −1.29
TRINITY_DN106478_c0_g2 Putative 12-oxophytodienoate reductase 11 −1.35
GO:0004497 molecular_function monooxygenase activity 1 TRINITY_DN95871_c1_g1 Zeaxanthin epoxidase, chloroplastic −1.26
TRINITY_DN112129_c0_g3 Flavonoid 3′-monooxygenase −1.54
TRINITY_DN109168_c1_g3 3,9-dihydroxypterocarpan 6A–monooxygenase −1.80
TRINITY_DN95695_c0_g5 Premnaspirodiene oxygenase −1.96
TRINITY_DN102712_c0_g3 4-hydroxyphenylacetaldehyde oxime monooxygenase −2.23
TRINITY_DN117628_c13_g163 Ribulose bisphosphate carboxylase small chain PW9, chloroplastic −2.31
TRINITY_DN108893_c0_g1 Cytochrome P450 711A1 −2.34
TRINITY_DN101496_c0_g2 4-hydroxyphenylacetaldehyde oxime monooxygenase −2.35
TRINITY_DN117628_c13_g182 Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic −2.77
TRINITY_DN111951_c3_g11 Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic −2.94
TRINITY_DN117628_c13_g29 Ribulose bisphosphate carboxylase small chain PW9, chloroplastic −3.12
TRINITY_DN117628_c13_g288 Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic −3.32
TRINITY_DN112168_c0_g2 Cytochrome P450 709B2 −3.35
TRINITY_DN102506_c1_g1 Flavin-containing monooxygenase FMO GS-OX-like 5 −3.45
TRINITY_DN117628_c13_g145 Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic −3.65
TRINITY_DN117628_c13_g315 Ribulose bisphosphate carboxylase small chain, chloroplastic −3.96

The transcriptional regulations under heat stress, log2 fold change (log2 FC), in these GO terms are also listed