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. 2016 Dec 1;5(11):560–568. doi: 10.1302/2046-3758.511.BJR-2016-0033.R3

Table I.

Primer sequences used for PCR

Gene Oligonucleotide Sequence Annealing temperature (°C) Product size (bp) PCR efficiency
18S Forward 5′ GTAACCCGTTGAACCCCATT 3′ 57 151 1.91
Reverse 5′ CCATCCAATCGGTAGTAGCG 3′
UBC Forward 5′ GCGGTGAACGCCGATGATTAT 3′ 56 202 1.86
Reverse 5′ TTTGCCTTGACATTCTCGATGG 3′
YWHAZ Forward 5′ GATGAAGCCATTGCTGAACTTG 3′ 56 229 1.97
Reverse 5′ CTATTTGTGGGACAGCATGGA 3′
COL2A1 Forward 5′ AGGGCCAGGATGTCCGGCA 3′ 56 195 2.0
Reverse 5′ GGGTCCCAGGTTCTCCATCT 3′
ACAN Forward 5′ CAACTACCCGGCCATCC 3′ 57 160 2.0
Reverse 5′ GATGGCTCTGTAATGGAACAC 3′

UBC, ubiquitin C; YWHAZ, Tyrosine 3-monooxygenase; COL2A1, collagen type II; ACAN, aggrecan; PCR, polymerase chain reaction