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. 2018 Jan 25;15:6. doi: 10.1186/s12989-018-0243-7

Table 1.

ISD3 simulation parameters for the 20 nm and 110 nm systems

Parameters 20 nm system 110 nm system Fitted
Parameter?
Liquid media characteristics
 Media height, L (m) 0.00315 0.00315 No
 Media volume, V (mL) 3 3 No
 Media temperature, T (K) 310 310 No
 Media viscosity, μ(N s/m2) 0.00074 0.00074 No
 Media density, ρf (g/mL) 1 1 No
 Surface area, A (m2) 0.000952 0.000952 No
Initial particle characteristics
 Particle state Primary particles coated with proteins Primary particles coated with proteins
 Primary particle size / diameter, dp (nm) 20 110 No
 Primary particle density, ρp(g/cm3) 10 10 No
 Thickness of protein layer, ΔRc(nm) 12 22.5 No
 Effective diameter, dpc = dp + 2ΔRc(nm) 44 155 No
 Effective density, ρpc(g/cm3) 1.583 1.914 No
Numerical grid spacing and time discretization
 Grid spacing along particle diameter, ΔDp(nm) 1 1 No
 Grid spacing along media height, Δx (m) 3.1532E-6 3.1532E-6 No
 Total simulation time, tmax (h) 24 24 No
Parameters of the dissolution model
P0(FBS %) 10 10 No
 Rate constant for the transfer of ions from the particle surface to the free ion state, kf(mL nm− 2 h− 1) 6.00E-18 6.00E-18 Yes
 Saturated concentration of free ions in solution, Csatdiss,f(μg/mL) 1 1 Yes
 Rate constant for the slow transfer of ions from the particle surface to the proteins, kp(mL nm− 2 h− 1) 3.00E-17 3.00E-17 Yes
 Rate constant for the initial fast transfer of silver ions from the particle surface to the protein-bound state, kp2(mL nm− 2 h− 1) 1.00E-15 1.00E-15 Yes
 Rate constant for the transfer of free ions from solution to the protein-bound state, kf2p(ug− 1 mL h− 1) 0.0114 0.0114 Yes
 Rate constant for the transfer of ions from the protein-bound state to the free ion state, kp2f(ug− 1 mL h− 1) 0.016 0.016 Yes
n (μg mL−1 FBS%− 1) 0.4 0.4 Yes
n2(μg mL− 1 FBS%− 1) 0.19822 0.19822 Yes
Parameters of the cell uptake model for ions
 Diffusion coefficient, D12(cm2/h) 9.02e-9 9.02e-9 Yes
 Cell membrane thickness,Dis12(cm) 7.8e-7 7.8e-7 Yes
 Cell:media silver ion partition coefficient, PC21 25.8 25.8 Yes
 Cell volume, Vcell(mL) 1.936e-3 1.936e-3 No