Table 1. List of multimeric complexes used for prediction.
| N | PDB | Name | Pathway(s) | Evidence |
|---|---|---|---|---|
| 3 | 1a0r | Transducin βγ dimer bound to phosducin | BG> BGP | E,B |
| 1ikn | I-κ-B α/NF-κ-B complex | AC> ACD | E,B,M | |
| 1vcb | ElonginBC bound to VHL | AB> ABC | E,B,M | |
| 2aze | Rb C-terminal bound to E2F1-DP1 | AB> ABC | E,B | |
| 4 | 1es7 | Complex between BMP-2 and 2 BMP receptors | AA′> AA′B> AA′BB′ | S |
| 1gpq | IVY complex with its target HEWL | AA′> AA′C> AA′CC′ | B,S | |
| 2e9x | Human GINS core complex | BD> ABD> ABCD | E | |
| 1kf6 | Fumarate reductase | CD> BCD> ABCD | E,M | |
| 2bq1 | Ribonucleotide reductase | EE′+II′> EE′II′ | E,B,S | |
| 2qsp | Bovine hemoglobin at pH 5.7 | AB> AB+A′B′> AA′BB′ | E,M | |
| 3fh6 | Maltose transporter | AA′> AA′F or AA′> AA′G or AA′+FG> AA′FG | E,M | |
| 5 | 1hez | Antibody-antigen complex | AB> AB+A′B′> AB+A′B′E> AA′BB′E | B,S |
| 1w88 | Pyruvate dehydrogenase E1 bound to a subunit of E2 | AA′BB′> AA′BB′I | B | |
| 6 | 1du3 | TRAIL-SDR5 | DD′> DD′D″> ADD′D″> AA′DD′D″> AA′A″DD′D″ | B,S |
| 1rlb | Retinol binding protein bound to transthyretin | AA′> AA′+A″A‴> AA′A″A‴> AA′A″A‴E> AA′A″A‴EE′ | B,S | |
| 1s5b | Cholera holotoxin with an A-subunit | B1B2> B1B2B3> AB1B2B3> AB1B2B3B4> AB1B2B3B4B5† | E,M | |
| 3vyt | HypCDE complex | CD+C′D′+EE′> CD+C′D′EE′> CC′DD′EE′† | E,M | |
| 4hi0 | UreF/UreH/UreG complex | FH+F′H′+GG′> FF′HH′+GG′> FF′GG′HH′† | E,M | |
| 4igc | Bacterial RNA polymerase | AA′> AA′C> AA′C+DE> AA′CDE> AA′CDEX | E,M | |
| 7 | 3uku | Arp2/3 | CG+DF> ACDFG> ABCDEFG | E,M |
| 4gwp | Mediator head module | ABD> ABCDG+EF> ABCDEFG | E,M |
N: Number of chains. PDB: PDB ID of bound complex structure. Pathways marked with dagger (†) use letters corresponding to protein names; others use PDB chain IDs. Evidence types: E: experimental evidence; B: biological inference; S: structural inference; M: model of assembly.