Table 2.
Amino acid differences between the proteins of swine and chicken strains.
HA classification | A/Indonesia/6/05-like | HA classification | Clade 2.1.3 | |||||
---|---|---|---|---|---|---|---|---|
|
|
|||||||
Virus | Ck UT6016 |
Sw UT6003 |
Virus | Ck UT6044 |
Sw UT6005 |
Sw UT6010 |
||
|
|
|||||||
MLD50 (log10EID50)a | 3.8 | >6.1 | MLD50 (log10EID50) | 2.2 | >6.1 | 3.5 | ||
Protein position | Protein position | |||||||
PB2 | 526 | R | K | PB2 | 13c | Q | H | Q |
PA | 231 | T | A | 150d | G | V | G | |
618 | A | T | 184 | T | A | A | ||
684 | G | E | 317 | L | M | M | ||
HA1b | 36 | A | T | 365 | I | M | M | |
133 | A | S | 678 | G | D | D | ||
NP | 50 | S | N | PB1-F2 | 4 | G | E | E |
318 | S | P | 47 | S | N | N | ||
NA | 266 | S | G | PA | 367 | R | K | K |
NS1 | 27 | M | L | 397 | K | E | E | |
74 | G | D | 547 | D | N | N | ||
180 | F | L | HA1 | 156 | A | T | T | |
NA | 17 | I | V | V | ||||
41 | G | R | G | |||||
197 | K | R | R | |||||
M2 | 23 | S | N | N | ||||
29 | A | V | V | |||||
68 | V | I | I | |||||
NS1 | 124 | K | I | I | ||||
212 | N | S | S | |||||
NS2 | 60 | I | V | V | ||||
92 | N | N | T |
The same data as shown in Table 1.
H5 numbering
Gln at 13 position of the PB2 protein is widely conserved among H1N1, H3N2, and H5N1 viruses.
Gly-to-Val substitution at 150 position of the PB2 protein is a novel mutation among H1N1, H3N2 and H5N1 viruses.