Table 4. Best scoring partition schemes for three concatenated molecular data sets.
| Marker | Marker subset | Alignment positions | 174 taxa concatenated data | 163 taxa concatenated data | 138 taxa concatenated data | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Model for ML runs | ML partition ID | Model for BI runs | BI partition ID | Model for ML runs | ML partition ID | Model for BI runs | BI partition ID | Model for ML runs | ML partition ID | Model for BI runs | BI partition ID | |||
| 16S rRNA | 16S rRNA | 1–583 | TVM+I+G | 1 | GTR+I+G | 1 | TVM+I+G | 1 | GTR+I+G | 1 | TVM+I+G | 1 | GTR+I+G | 1 |
| tRNA-LEU | 584–653 | TVM+I+G | 1 | GTR+I+G | 1 | TVM+I+G | 1 | GTR+I+G | 1 | TVM+I+G | 1 | GTR+I+G | 1 | |
| ND1 | 654–1,105 | GTR+I+G | 2 | GTR+I+G | 2 | GTR+I+G | 2 | GTR+I+G | 2 | TrN+I+G | 2 | GTR+I+G | 2 | |
| CO1 | Codon Pos. 1 | 1,106–1,762\3 | SYM+I+G | 3 | SYM+I+G | 3 | SYM+I+G | 3 | SYM+I+G | 3 | SYM+I+G | 3 | SYM+I+G | 3 |
| Codon Pos. 2 | 1,107–1,762\3 | F81+I+G | 4 | F81+I+G | 4 | F81+I+G | 4 | F81+I+G | 4 | F81+I+G | 4 | F81+I+G | 4 | |
| Codon Pos. 3 | 1,108–1,762\3 | GTR+I+G | 5 | GTR+I+G | 5 | GTR+I+G | 5 | GTR+I+G | 5 | GTR+I+G | 5 | GTR+I+G | 5 | |
| 28S rRNA,H3 | D1 and D2 region | 1,763–2,986 | GTR+I+G | 6 | GTR+I+G | 6 | GTR+I+G | 6 | GTR+I+G | 6 | GTR+I+G | 6 | GTR+I+G | 6 |
| Codon Pos. 1 | 2,988–3,313\3 | SYM+I+G | 3 | SYM+I+G | 3 | TrNef+I | 8 | SYM+I+G | 3 | TrNef+I | 8 | SYM+I+G | 3 | |
| Codon Pos. 2 | 2,989–3,313\3 | F81+I+G | 4 | F81+I+G | 4 | TrNef+I | 8 | JC+I | 8 | TrNef+I | 8 | JC+I | 8 | |
| Codon Pos. 3 | 2,987–3,313\3 | GTR+I+G | 7 | GTR+I+G | 7 | GTR+G | 7 | GTR+G | 7 | GTR+G | 7 | GTR+G | 7 | |