Table 3.

HCC-related gene sets from the chemical and genetic perturbations collection enriched in the high AFP tumor class

Name	FDR
BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	0.086
HOSHIDA_LIVER_CANCER_SUBCLASS_S2	0.088
BOYAULT_LIVER_CANCER_SUBCLASS_G123_UP	0.099
CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	0.101
YAMASHITA_LIVER_CANCER_WITH_EPCAM_UP	0.104
SAKAI_CHRONIC_HEPATITIS_VS_LIVER_CANCER_UP	0.118
LEE_LIVER_CANCER_SURVIVAL_DN	0.147
CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN	0.186
BOYAULT_LIVER_CANCER_SUBCLASS_G23_UP	0.228
BOYAULT_LIVER_CANCER_SUBCLASS_G12_UP	0.252

HCC: hepatocellular carcinoma; FDR: false discovery rate