Table 1.
Average Number of SNPs in Coding Sequences
| Species | Average Number of SNPs in Coding Sequences |
Average nonsyn/syn Ratio |
Average Proportion of PROVEAN Damaging SNPs (#damaging SNPs/#nonsyn SNPs) |
||||||
|---|---|---|---|---|---|---|---|---|---|
| Domestic | Wild | P-Value | Domestic | Wild | P-Value | Domestic | Wild | P-Value | |
| Rabbit | 45,477.8 | 123,534.9 | <0.001 | 0.83 | 0.70 | <0.001 | 0.36 | 0.35 | 0.026 |
| Dog | 31,932.6 | 38,934.0 | <0.001 | 1.19 | 1.04 | <0.001 | 0.48 | 0.46 | <0.001 |
| Pig (Europe) | 60,405.6 | 34,084.3 | NS | 0.62 | 0.80 | 1.00 | 0.24 | 0.28 | NS |
| Pig (Asia) | 48,365.5 | 61,963.5 | <0.001 | 0.68 | 0.62 | <0.001 | 0.24 | 0.25 | NS |
| Chicken (domestic breeds) | 15,057.5 | 30,942.3 | <0.001 | 0.46 | 0.42 | <0.001 | 0.27 | 0.24 | <0.001 |
| Chicken (selection lines) | 9,947.0 | 30,970.0 | <0.001 | 0.57 | 0.42 | <0.001 | 0.32 | 0.24 | <0.001 |
| Rice (japonica) | 35,863.3 | 85,096.0 | <0.001 | 1.83 | 1.20 | <0.001 | 0.42 | 0.30 | <0.001 |
| Rice (indica) | 39,401.0 | 67,852.0 | <0.001 | 1.40 | 1.20 | <0.001 | 0.34 | 0.32 | <0.001 |
| Soybean | 65,130.0 | 103,270.0 | <0.001 | 1.39 | 1.36 | <0.001 | 0.21 | 0.23 | NS |
| Silkworm | 131,370.0 | 179,755.0 | <0.001 | 0.32 | 0.30 | <0.001 | 0.15 | 0.15 | NS |