Table 2.
Peptide | Sequence | Groupa | Charge | Hydrophobicity | log2 fold | p-value | MBC (μM)b | |||
---|---|---|---|---|---|---|---|---|---|---|
| ||||||||||
W3110 | Ab5075 | PA14 | NDM E. coli | |||||||
Cecropin P1 | SWLSKTAKKLENSAKKRISEGIAIAIQGGPR | - | 5.000 | −0.590 | - | - | ≤2 | ≤2 | ≤2 | ≤2 |
P1 | RLVRILVSKRPVAIKPYFRL | 29 | 5.997 | 0.325 | −1.98 | <1.3e-5 | 2 | ≤2 | ≤2 | ≤2 |
P2 | TTSIRRRYQVSLIRRHRGKR | 67 | 8.088 | −1.490 | −3.33 | <5.2e-21 | 16 | ≤2 | ≤2 | 4 |
P3 cyclicc | TCRTNRPCFYDLDLNVCRCS | 26 | 0.750 | −0.381 | −4.60 | <2.85e-27 | ≤2 | 4 | ≤2 | 4 |
P4 | SNGDGTLDAGSTCAPFYARA | 49 | −1.064 | −0.290 | −1.63 | <8.7e-11 | 2 | 16 | 4 | 4 |
P5 cyclicd | YYNPLPHDCGRDNNTDICSR | 46 | −1.04 | −1.31 | −2.88 | <8.4 e-34 | 4 | 8 | ≤2 | ≤2 |
P6 | LSVDKRPVLHPEHIYGHNHY | 73 | 0.362 | −0.910 | −3.63 | <1.2e-51 | 4 | 32 | 8 | >128 |
P7 | IHRDQQHESFLDARPEPGLTE | 2 | −2.814 | −1.348 | −2.09 | <1.4e-9 | 4 | 16 | 4 | 4 |
P8 | TIDFGVRNINQSNLVYDTER | 33 | −1.000 | −0.670 | −2.76 | <5.1e-44 | 8 | 16 | 8 | >128 |
P9 | PCNPDHDYRPFGNFRIAFTT | 60 | 0.027 | −0.845 | −2.59 | <2.5e-15 | 8 | 16 | 8 | 8 |
P10 | TRDTNDLISSRTAAPSMV | 60 | −0.001 | −0.422 | −10.7 | <2.0e-66 | 16 | 64 | 8 | 32 |
P11 | LPLPSCSSHGGDADNTSQRN | 8 | −0.972 | −1.060 | −4.66 | <8.5e-59 | 16 | 128 | 16 | 32 |
P12 | PNDPDSPCVYRMPNARGCSI | 75 | −0.126 | −0.765 | −3.80 | <2.3e-27 | 16 | 128 | 16 | 16 |
P13 | YDLSDSNCLPANRDKRYYVI | 79 | −0.066 | −0.845 | −1.10 | <1.6e-12 | 16 | >128 | 16 | >128 |
P14 | SMLAYVDKNDHINPPHSPRS | 10 | 0.180 | −1.055 | −5.49 | <8.9e-60 | 32 | 128 | 32 | 64 |
P15 | DATPHAALFFTVKDHTAGDN | 69 | −1.819 | −0.380 | −2.83 | <8.6e-11 | 32 | 64 | 32 | 64 |
P16 | SDDAQRCYPHNRTPFTYTYI | 39 | 0.025 | −1.230 | −2.18 | <2.8e-07 | 32 | >128 | 16 | 32 |
P17 | EPCSPKNNYHDLFYRT | 22 | 0.027 | −1.488 | −1.80 | <6.2e-6 | 128 | >128 | 128 | >128 |
P18 | CNPLNGADRRTDSFPRFTVI | 51 | 0.937 | −0.545 | −1.11 | <5.2e-8 | 128 | >128 | 64 | >128 |
P3 | TCRTNRPCFYDLDLNVCRCS | 26 | 0.750 | −0.400 | −4.60 | <2.85e-27 | >128 | 128 | >128 | >128 |
P5 | YYNPLPHDCGRDNNTDICSR | 46 | −1.035 | −1.380 | −2.88 | <8.4 e-34 | >128 | >128 | 128 | >128 |
C1 | PDRAIDTYRTSPVADQRYNA | - | −0.002 | −1.245 | 0.09 | 0.999 | >128 | >128 | >128 | >128 |
Peptide group numbers were determined based on clustering as described in the methods.
Minimal bactericidal concentrations (MBC) were determined as the lowest concentration of peptide that results in at least 99.9% killing of the initial inoculums. Data are representative of three independent experiments.
P3 peptide was synthesized into cyclic formation by two disulfide bonds at C2–C19 and C8–C17.
P5 peptide was synthesized into cyclic formation by one disulfide bond at C9–C18. Disulfide bonds in P3 and P5 are represented by black bars.