Table 2.

Genomic classes used in the study

Category Code	Category Description
CDS	Protein coding sequence regions
UTR	Protein coding untranslated regions
INTRON	Protein coding intronic regions
DHS	DNase hypersensitive regions
Genome Segmentations
PROMOTER_w_TSS	Predicted promoter region including transcription start site
PROMOTER_FLANK	Predicted promoter flanking region
ENHANCER	Predicted enhancer
W_ENHANCER	Predicted weak enhancer
CTCF_ENRICHED	CTCF enriched elements
Transcription Factor Binding Sites
TFGEN	General transcription factors
TFCHR	Chromatin-modifying transcription factors
TFSS	Sequence-specific transcription factors
BHLH_FAM	Basic helix-loop-helix protein family
BZIP_FAM	Basic leucine zipper family
HMD_FAM	Homeobox-domain family
NR_FAM	Nuclear hormone receptor family
P53_FAM	P53-like transcription factor family
WHTH_FAM	Winged helix-turn-helix family
ZNF_FAM	Zinc finger protein family
Reference Regions
NON_ANN	Non-annotated regions at least 200 kb away from CDS
WHOLE_GENOME	Whole genome average