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. Author manuscript; available in PMC: 2018 Jan 28.
Published in final edited form as: Pac Symp Biocomput. 2017;22:254–265. doi: 10.1142/9789813207813_0025

Table 1.

Variations of DNN Model Hyperparameters

Model Conv.
Layers
Conv.
Size (nout)
Conv. filter
Sizes (k)
Conv. Pool
Size (m)
LSTM
Layers
LSTM
Size (d)
Small RNN N/A N/A N/A N/A 1 16
Medium RNN N/A N/A N/A N/A 1 32
Large RNN N/A N/A N/A N/A 2 32
Small CNN 2 64 9,5 2 N/A N/A
Medium CNN 3 64 9,5,3 2 N/A N/A
Large CNN 4 64 9,5,3,3 2 N/A N/A
Small CNN-RNN 1 64 5 N/A 2 32
Medium CNN-RNN 1 128 9 N/A 1 32
Large CNN-RNN 2 128 9,5 2 1 32