Table 2. Composite Z-score for modeling of all de novo ligands designed using Docking, Shape, and QSAR for ligand-guided predictions of high affinity drug-like compounds.
Drug candidate | Sub-metrics | ComboScore | ||||
---|---|---|---|---|---|---|
RANK | NAME | docking (normalized) | Shape Sim (normalized) | QSAR (normalized) | Z-score sub =Di+Si+Qi | Avg Z-score |
1 | SSI-2‡ | 0.99 | 0.77 | 0.90 | 2.67 | 0.89 |
2 | TC03.18 | 0.91 | 0.77 | 0.96 | 2.64 | 0.88 |
3 | SSI-3‡ | 0.88 | 0.81 | 0.94 | 2.62 | 0.87 |
4 | SAR707 8nM (TC03.100) | 0.63 | 1.00 | 0.96 | 2.59 | 0.86 |
5 | TC03.14 | 0.84 | 0.79 | 0.95 | 2.58 | 0.86 |
6 | TC03.46 | 0.92 | 0.81 | 0.85 | 2.58 | 0.86 |
7 | TC03.10 | 0.84 | 0.74 | 0.98 | 2.56 | 0.85 |
8 | TC03.37 | 0.85 | 0.71 | 0.92 | 2.48 | 0.83 |
9 | TC03.1 | 0.78 | 0.71 | 0.96 | 2.45 | 0.82 |
10 | TC03.6 | 0.73 | 0.76 | 0.94 | 2.42 | 0.81 |
11 | TC03.23 | 0.90 | 0.72 | 0.76 | 2.37 | 0.79 |
12 | TC03.48 | 0.57 | 0.80 | 0.98 | 2.34 | 0.78 |
13 | TC03.61 | 0.72 | 0.80 | 0.81 | 2.33 | 0.78 |
14 | TC03.31 | 0.91 | 0.71 | 0.68 | 2.31 | 0.77 |
15 | TC03.5 | 0.84 | 0.70 | 0.77 | 2.30 | 0.77 |
16 | SetB.74 | 0.78 | 0.57 | 0.91 | 2.27 | 0.76 |
17 | Abbott 10g phenoxyl 100nM | 0.77 | 0.54 | 0.95 | 2.26 | 0.75 |
18 | TC03.15 | 0.63 | 0.74 | 0.88 | 2.25 | 0.75 |
19 | Abbott 7c 2chlorophenoxyl 51nM | 0.85 | 0.43 | 0.97 | 2.24 | 0.75 |
20 | SSI-4‡ | 0.78 | 0.62 | 0.83 | 2.23 | 0.74 |
21 | SetB.73 | 0.78 | 0.60 | 0.86 | 2.23 | 0.74 |
22 | DaiichiSankyo 3nM [50] | 0.67 | 0.64 | 0.91 | 2.23 | 0.74 |
23 | SetB.7 | 0.77 | 0.58 | 0.88 | 2.23 | 0.74 |
24 | TC03.53 | 0.84 | 0.71 | 0.64 | 2.19 | 0.73 |
25 | Merck Inhibitor <100 nM | 0.70 | 0.47 | 1.00 | 2.16 | 0.72 |
26 | TC03.47 | 0.89 | 0.68 | 0.57 | 2.15 | 0.72 |
27 | SetB.61 | 0.69 | 0.62 | 0.82 | 2.13 | 0.71 |
28 | TC03.7 | 0.80 | 0.73 | 0.55 | 2.08 | 0.69 |
29 | TC03.8 | 0.44 | 0.73 | 0.89 | 2.07 | 0.69 |
30 | SetA.69 | 0.74 | 0.42 | 0.89 | 2.05 | 0.68 |
31 | SetB.6 | 0.68 | 0.58 | 0.74 | 2.00 | 0.67 |
32 | SetB.52 | 0.57 | 0.64 | 0.76 | 1.96 | 0.65 |
33 | SetB.66 | 0.71 | 0.60 | 0.65 | 1.95 | 0.65 |
34 | TC03.66 | 0.52 | 0.65 | 0.77 | 1.93 | 0.64 |
35 | TC03.56 | 0.86 | 0.65 | 0.41 | 1.92 | 0.64 |
36 | SetA.61 | 0.67 | 0.40 | 0.85 | 1.92 | 0.64 |
37 | SetA.70 | 0.55 | 0.39 | 0.95 | 1.89 | 0.63 |
38 | SetB.69 | 0.82 | 0.62 | 0.26 | 1.70 | 0.57 |
39 | SetA.100 control (400nM) | 0.72 | 0.40 | 0.56 | 1.68 | 0.56 |
40 | SetB.49 | 0.57 | 0.57 | 0.52 | 1.67 | 0.56 |
41 | SSI-1‡ | 0.60 | 0.61 | 0.45 | 1.66 | 0.55 |
42 | TC03.41 | 0.57 | 0.72 | 0.32 | 1.62 | 0.54 |
43 | SetA.68 | 0.74 | 0.38 | 0.34 | 1.46 | 0.49 |
44 | SetA.59 | 0.72 | 0.40 | 0.31 | 1.42 | 0.47 |
45 | DaiichiSankyo IC50 100 nM[53] | 0.87 | 0.52 | 0.00 | 1.39 | 0.46 |
46 | Abbott 10d phenoxyl 51nM | 0.85 | 0.45 | 0.00 | 1.30 | 0.43 |
47 | Abbott 10c phenoxyl 38nM | 0.81 | 0.42 | 0.00 | 1.23 | 0.41 |
48 | SetA.1 | 0.54 | 0.39 | 0.26 | 1.19 | 0.40 |
49 | SetB.34 | 0.80 | 0.56 | -0.38 | 0.98 | 0.33 |
50 | SetB.75 | 0.57 | 0.58 | -1.05 | 0.09 | 0.03 |