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. Author manuscript; available in PMC: 2018 Jan 29.
Published in final edited form as: Curr Biol. 2017 Aug 30;27(17):2652–2660.e4. doi: 10.1016/j.cub.2017.07.033
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins
DMEM, GlutaMAX Supplement, pyruvate GIBCO Cat#31966021
Dermal Cell Basal Medium ATCC Cat#ATCC PCS-200-030
Fetal Bovine Serum GE Healthcare Bio-Sciences Cat#SV30160.03
Pen/strep stock, 10,000/10,000, 100ml Lonza Cat#LO DE17-602E
Hydrogen Peroxide Solution Sigma Aldrich Cat#216763-100ML-D
Doxorubicin hydrochloride Tebu-bio Cat#BIA-D1202-1
25% Glutaraldehyde solution Thermo Fisher Scientific Cat#MERC8.20603.1000
16% Formaldehyde (w/v), Methanol-free Thermo Fisher Scientific Cat#28906
Diamidino-2-phenylindole (DAPI) Sigma-Aldrich Cat#D9542
Critical Commercial Assays
Beta-Galactosidase Staining Kit BioVision Cat#K802
Click-iT EdU Alexa Fluor 488 Imaging kit Thermo Fisher Scientific Cat#C10337
Isolate II RNA Mini Kit Bioline Cat#BIO-52073
High-Capacity cDNA Reverse Transcription kit Applied Biosystems Cat#4368813
Universal Proble Library System Roche Cat#04683633001
SENSIFast Probe no-ROX One-step Kit Bioline Cat#BIO-76001
RNAeasy mini kit QIAGEN Cat#74104
Truseq RNA Sample Preparation kit Illumina Cat#RS-122-2001 or RS-122-2002
HiSeq PE Cluster Kit v4 – cBot Illumina Cat#PE-401-4001
HiSeq SBS Kit v4 (50 cycles) Illumina Cat#FC-401-4002
Deposited Data
Self-generated RNA-seq datasets of IRIS in fibroblasts, melanocytes and keratinocytes ArrayExpress database ArrayExpress: E-MTAB-5403
Experimental Models: Cell Lines
Human foreskin fibroblasts HCA2 O. Pereira-Smith (University of Texas Health Science Center, San Antonio) N/A
Human foreskin fibroblasts BJ ATCC Cat#CRL-2522
Mouse Embryonic Fibroblasts (MEFs) Self-produced N/A
Mouse primary skin microvascular endothelial cells Cellbiologics Cat#C57-6064
Human Epidermal Keratinocytes Neonatal Foreskin ATCC Cat#PCS-200-010
Human Epidermal Melanocytes Neonatal ATCC Cat#PCS-200-012
Oligonucleotides
Sets of primers for qPCR IDT Table S1
Software and Algorithms
SRA Toolkit 2.6.2 GitHub https://github.com/ncbi/sra-tools
FastQC software v0.11.5 Babraham Institute https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Trimmommatic 0.36 Usadellab http://www.usadellab.org/cms/?page=trimmomatic
STAR-2.5.1b GitHub https://github.com/alexdobin/STAR/releases
DESeq2 Bioconductor https://bioconductor.org/packages/release/bioc/html/DESeq2.html
MetaRNaseq CRAN https://cran.r-project.org/web/packages/metaRNASeq/index.html
Consensus Path DB-human Max Planck Institute http://cpdb.molgen.mpg.de/
R and associated R-packages (pheatmap, ggplot2, ggfortify, RcolorBrewer, VennDiagram) Bioconductor, CRAN https://cran.r-project.org/web/packages/
ImageJ NIH – public domain https://imagej.nih.gov/ij/download.html
HHS Vulnerability Disclosure