Table 1.
Identification of SNPs in putative candidate genes around the qDTH2
| Gene name | Positions (bp) | Reference | Variant | Variant effect | Y-bulk variant rate | S-bulk variant rate | Description |
|---|---|---|---|---|---|---|---|
| Seita.2G285800 | 38231339 | – | A | frame shift | 0.14 | 1 | No protein domain |
| Seita.2G290100 | 38580942 | G | A | missense | 0.17 | 0.69 | Protein of unknown function |
| Seita.2G293600 | 38903157 | A | G | missense | 0.4 | 0.82 | Transferase family |
| Seita.2G296100 | 39049199 | – | GC | frame shift | 0.25 | 0.88 | GLUTATHIONE S-TRANSFERASE |
| Seita.2G296300 | 39075668 | A | C | missense | 0.4 | 0.6 | AUXIN-RESPONSIVE FAMILY PROTEIN |
| Seita.2G296500 | 39084573 | G | A | missense | 0 | 0.71 | AUXIN-RESPONSIVE FAMILY PROTEIN |
| 39084644 | G | C | missense | 0.4 | 0.73 | ||
| Seita.2G297100 | 39107909 | A | G | missense | 0 | 1 | REGULATOR OF VPS4 ACTIVITY IN THE |
| 39108137 | C | T | missense | 0.33 | 1 | MVB PATHWAY PROTEIN | |
| 39108296 | C | T | missense | 0.25 | 1 | ||
| 39109931 | C | A | missense | 0 | 0.67 |