Table 2.

Identification of SNPs in putative candidate genes around the qDTH7

Gene name	Positions (bp)	Reference	Variant	Variant effect	Y-bulk variant rate	L-bulk variant rate	Description
Seita.7G232300	29604317	C	G	missense	1	0	OPT oligopeptide transporter
Seita.7G232400	29606996	A	G	missense	0.7	0	OPT oligopeptide transporter
	29607005	G	A	missense	0.75	0
Seita.7G232400	29607117	G	A	missense	0.66	0	AN1-TYPE ZINC FINGER PROTEIN
Seita.7G236700	29889610	G	A	missense	0.88	0	COPPER TRANSPORT PROTEIN ATOX1
Seita.7G236900	29903348	G	T	missense	0.33	0	LEUCINE RICH REPEAT
	29903684	T	G	missense	0.71	0
	29903698	C	T	missense	0.71	0
	29904153	G	T	missense	1	0
	29904176	C	T	missense	1	0
	29904227	C	T	missense	0.83	0
	29905361	C	G	missense	0.8	0
Seita.7G237100	29913322	C	T	missense	0.86	0	No domain
Seita.7G237300	29927222	A	C	missense	0.86	0	Protein tyrosine kinase
Seita.7G237600	29974234	C	G	missense	0.78	0	Non-specific protein-tyrosine kinase
Seita.7G237800	30013535	AG	GC	missense	0.83	0	Protein kinase domain (Pkinase)
	30041257	G	A	missense	0.88	0
	30041336	G	A	missense	0.8	0
Seita.7G238500	30070539	G	A	missense	0.7	0	SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN
Seita.7G238600	30074953	A	G	missense	0.67	0	PEROXISOME ASSEMBLY FACTOR
	30076086	A	C	missense	0.67	0
Seita.7G238800	30093672	T	C	missense	0.88	0	IMIDAZOLEGLYCEROL PHOSPHATE DEHYDRATASE HIS7
Seita.7G239000	30102013	A	T	missense	0.71	0	PPR repeat family (PPR_2)
Seita.7G239300	30116522	G	C	missense	0.71	0	No domain
Seita.7G239400	30132361	G	C	missense	0.73	0	No domain
Seita.7G239500	30134969	–	deletion	frame shift	0.75	0	F-box domain (F-box)
Seita.7G239600	30139521	T	C	start lost	0.71	0	No protein domain
Seita.7G240300	30191072	A	C	missense	1	0	Kelch motif
	30297454	T	C	missense	0.67	0
Seita.7G241700	30306287	C	G	missense	0.89	0	Protein of unknown function
Seita.7G243900	30427428	G	C	missense	0.67	0	GLYCOSYLTRANSFERASE
Seita.7G244100	30438355	G	C	missense	0.75	0	Cysteamine dioxygenase/Persulfurase
Seita.7G244300	30447398	C	T	missense	0.67	0	F11F12.2 PROTEIN
	30448527	C	A	missense	0.6	0
Seita.7G245700	30512205	A	T	missense	0.8	0	No domain
Seita.7G245900	30519724	C	G	missense	1	0	LEUCINE-RICH REPEAT-CONTAINING PROTEIN
Seita.7G246700	30568896	A	C	missense	0.7	0	HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2
	30569082	T	C	missense	1	0
Seita.7G249600	30709399	T	G	missense	0.71	0	Anthocyanidin reductase
Seita.7G249700	30717256	G	A	missense	0.78	0	Anthocyanidin reductase
	30718052	G	C	missense	0.75	0
Seita.7G249800	30725051	C	G	missense	0.75	0	Anthocyanidin reductase
Seita.7G249900	30730621	T	C	missense	0.75	0	ORGANIC CATION/CARNITINE TRANSPORTER 4
Seita.7G250000	30739415	–	deletion	missense	0.71	0	ATP-BINDING TRANSPORT PROTEINRELATED
Seita.7G250400	30774875	C	G	missense	0.67	0	Protein of unknown function
	30774997	AA	CC	missense	0.75	0