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. 2017 Jul 4;67(1):61–77. doi: 10.1093/sysbio/syx061

Table 4.

Average coverage for nodes 1 (root) and 4 for different partitioning strategies when the clock is seriously violated

Model Inline graphic Calibration C (1P) CP (2P) G (50P) GCP (100P) PF (V) CS (V)
IR G(2, 40) Inline graphic B(0.8, 1.2) 48 0 0 0 0 66
      73 4 56 2 1 53
  Inline graphic(2, 4) Inline graphic B(0.8, 1.2) 100 100 100 100 100 100
      100 100 100 100 100 100
  G(2, 0.4) Inline graphic B(0.8, 1.2) 100 100 100 100 100 100
      100 100 100 100 100 100
  G(2, 40) Inline graphic B(0.8, 1.2) 100 93 99 96 89 100
    Inline graphic B(0.525, 0.575) 100 99 99 100 100 99
  Inline graphic(2, 4) Inline graphic B(0.8, 1.2) 99 82 99 80 68 92
    Inline graphic B(0.525, 0.575) 99 99 90 96 99 99
  G(2, 0.4) Inline graphic B(0.8, 1.2) 99 78 98 79 61 90
    Inline graphic B(0.525, 0.575) 99 99 84 94 99 99
  Inline graphic(2, 4) Inline graphic B(0.8, 1.2) 92 85 57 65 85 92
    t Inline graphic B(0.575, 0.625) 86 22 78 58 30 65
AR Inline graphic(2, 4) Inline graphic B(0.8, 1.2) 100 100 0 0 100 100
      100 100 0 0 99 100
  Inline graphic(2, 4) Inline graphic B(0.8, 1.2) 100 98 0 0 91 92
    Inline graphic B(0.525, 0.575) 96 97 64 74 99 99

Notes: Coverage for each node is averaged over the 100 replicates. The first row in each cell refers to node 1 and the second to node 4. See caption of Table 1 for more details.