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. 2018 Jan 30;13(1):e0191297. doi: 10.1371/journal.pone.0191297

Table 6. Summary of key enzymes and proteins related to seed weight in the Swiss-Prot and NR databases.

Enzymes/protein DEG number Up/Down (numbers of genes) Gene ID
Cyclin-dependent kinase inhibitor 3 1 1 Down GSBRNA2T00109531001
Cyclin-B1-2 1 1 Down GSBRNA2T00051807001
E3 ubiquitin ligase 2 2 Up GSBRNA2T00140145001; GSBRNA2T00097655001
E3 ubiquitin-protein ligase 19 14 Up, 5 Down GSBRNA2T00049900001; GSBRNA2T00073497001;
GSBRNA2T00080006001; GSBRNA2T00076273001;
GSBRNA2T00052859001; GSBRNA2T00062381001;
GSBRNA2T00125575001; GSBRNA2T00136480001;
GSBRNA2T00017196001; GSBRNA2T00018260001;
Brassica_newGene_5236; GSBRNA2T00063271001;
GSBRNA2T00018008001; GSBRNA2T00032349001;
GSBRNA2T00011257001; GSBRNA2T001195860011;
Brassica_newGene_1243; GSBRNA2T00151834001;
GSBRNA2T00097032001
Ubiquitin-protein ligase 4 2 2 Up GSBRNA2T00119586001; GSBRNA2T00017196001
Ubiquitin family protein 1 1 Down GSBRNA2T00123522001
26S proteasome non-ATPase regulatory subunit 5 2 Up, 3 Down GSBRNA2T00150716001; GSBRNA2T00108467001;
Brassica_newGene_1807; Brassica_newGene_2120;
GSBRNA2T00134599001
26S protease regulatory subunit 6 4 Up, 2 Down GSBRNA2T00109634001; GSBRNA2T00074567001;
GSBRNA2T00116823001; GSBRNA2T00018348001; GSBRNA2T00151849001; Brassica_newGene_5455
Auxin response factor 4 1 1 Up Brassica_newGene_719
Serine carboxypeptidase 3 3 Down GSBRNA2T00105277001; GSBRNA2T00158449001;
GSBRNA2T00136613001
Serine carboxypeptidase S28 family protein 1 1 Up GSBRNA2T00001408001
Serine/threonine-protein phosphatase PP1 isozyme 2 1 Up, 1 Down Brassica_newGene_1210; GSBRNA2T00046355001
Serine/threonine protein phosphatase regulatory subunit 3 2 Up, 1 Down GSBRNA2T00026535001; GSBRNA2T00109497001;
GSBRNA2T00080035001
Serine/threonine-protein phosphatase 7 GN 1 1 Up Brassica_newGene_4770
Auxin-responsive protein IAA12 1 1 Up GSBRNA2T00025700001
IAA-amino acid hydrolase 2 1 1 Down GSBRNA2T00060750001