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. 2018 Jan 18;12(1):e0006160. doi: 10.1371/journal.pntd.0006160

Table 1. Templates used to build the 3D models of LieIF (PDB ID and chain ID) listed with descending identity rates.

PDB_ID Fragment Function Organism Resolution(Å) Identity(%)
1 1FUK_A 230–394 Yeast eIF4A Saccharomyces cerevisiae 1.75 57.69
2 3FHO_B 1–503 RNA helicase DBP5 Schizosaccharomyces pombe 2.80 40.07
3 2KBE_A 71–296 RNA helicase DBP5 Saccharomyces cerevisiae NA(*) 39.55
4 1HV8_B 1–367 MjDEAD RNA helicase Methanocaldococcus jannaschii 3.00 36.29
5 1XTI_A 46–428 RNA helicase P47 Homo sapiens 1.95 34.68
6 2JGN_C 408–579 RNA helicase DDX3X Homo sapiens 1.91 34.39
7 1Q0U_B 2–219 BSTDEAD N-terminus Geobacillus stearothermophilus 1.85 34.34
8 2Z0M_A 1–337 Hyp. RNA helicase Sulfolobus tokodaii 1.90 31.50
9 3EAQ_B 215–426 RNA-dependant ATPase Thermus thermophilus 2.30 28.93
10 3I32_A 218–517 RNA-dependant ATPase Thermus thermophilus 2.80 27.27
11 2XB2_X 1–411 eIF4A-III (DDX48) Homo sapiens 3.40 56.99
12 2HYI_I 1–411 Prob. RNA helicase DDX48 Homo sapiens 2.30 56.70
13 2GXQ_A 1–207 RNA-dependent ATPase Thermus thermophilus 1.20 37.93
14 3FMO_B 1–300 RNA helicase DDX19B Homo sapiens 2.51 37.33
15 2DB3_D 200–623 RNA helicase VASA Drosophilia melanogaster 2.20 27.74
16 3DKP_A 139–381 Prob. RNA helicase DDX52 Homo sapiens 2.10 27.35
17 3I5X_A 37–597 RNA helicase MSS116 Saccharomyces cerevisiae 1.90 26.56

From 1-10: templates used to build apo-LieIF. Mean identity rate value is 36.5 ± 8.1%.

(*) NMR experiment.

From 11-17: templates used to build holo-LieIF. Mean identity rate value is 38.7 ± 12.3%.