Table 1. Templates used to build the 3D models of LieIF (PDB ID and chain ID) listed with descending identity rates.
N° | PDB_ID | Fragment | Function | Organism | Resolution(Å) | Identity(%) |
---|---|---|---|---|---|---|
1 | 1FUK_A | 230–394 | Yeast eIF4A | Saccharomyces cerevisiae | 1.75 | 57.69 |
2 | 3FHO_B | 1–503 | RNA helicase DBP5 | Schizosaccharomyces pombe | 2.80 | 40.07 |
3 | 2KBE_A | 71–296 | RNA helicase DBP5 | Saccharomyces cerevisiae | NA(*) | 39.55 |
4 | 1HV8_B | 1–367 | MjDEAD RNA helicase | Methanocaldococcus jannaschii | 3.00 | 36.29 |
5 | 1XTI_A | 46–428 | RNA helicase P47 | Homo sapiens | 1.95 | 34.68 |
6 | 2JGN_C | 408–579 | RNA helicase DDX3X | Homo sapiens | 1.91 | 34.39 |
7 | 1Q0U_B | 2–219 | BSTDEAD N-terminus | Geobacillus stearothermophilus | 1.85 | 34.34 |
8 | 2Z0M_A | 1–337 | Hyp. RNA helicase | Sulfolobus tokodaii | 1.90 | 31.50 |
9 | 3EAQ_B | 215–426 | RNA-dependant ATPase | Thermus thermophilus | 2.30 | 28.93 |
10 | 3I32_A | 218–517 | RNA-dependant ATPase | Thermus thermophilus | 2.80 | 27.27 |
11 | 2XB2_X | 1–411 | eIF4A-III (DDX48) | Homo sapiens | 3.40 | 56.99 |
12 | 2HYI_I | 1–411 | Prob. RNA helicase DDX48 | Homo sapiens | 2.30 | 56.70 |
13 | 2GXQ_A | 1–207 | RNA-dependent ATPase | Thermus thermophilus | 1.20 | 37.93 |
14 | 3FMO_B | 1–300 | RNA helicase DDX19B | Homo sapiens | 2.51 | 37.33 |
15 | 2DB3_D | 200–623 | RNA helicase VASA | Drosophilia melanogaster | 2.20 | 27.74 |
16 | 3DKP_A | 139–381 | Prob. RNA helicase DDX52 | Homo sapiens | 2.10 | 27.35 |
17 | 3I5X_A | 37–597 | RNA helicase MSS116 | Saccharomyces cerevisiae | 1.90 | 26.56 |
From 1-10: templates used to build apo-LieIF. Mean identity rate value is 36.5 ± 8.1%.
(*) NMR experiment.
From 11-17: templates used to build holo-LieIF. Mean identity rate value is 38.7 ± 12.3%.