Table 2. RNA-seq raw reads and alignment statistics.

Class	Patient ID	Total reads	Aligned Human Transcriptome	Aligned KSHV Transcriptome
Lesion	p22	15,471,116	12,849,035 (83%)	1,650
	p23	12,060,351	10,225,520 (85%)	17,202
	p32	15,907,935	12,629,009 (79%)	718
	p83	15,947,529	13,198,922 (83%)	3,441
Control	p22	13,818,393	10,543,129 (76%)	2
	p23	14,040,685	10,745,704 (77%)	0
	p32	14,307,950	10,240,092 (72%)	0
	p83	14,653,312	10,872,584 (74%)	60