Table 1.

Summary of RNA-seq data for turkey liver transcriptomes.

Line	Group	Replicate	PE Reads	Median Read Quality R1	Median Read Quality R2	% Mapped	% Concordant	Estimated Insert Mean (bp)	Observed Genes	Expressed Genes	% Genes Expressed
Eastern Wild	CNTL	EW9L	12,148,654	36.5	36.6	91.7	86.8	172	15,857	14,804	70.5
		EW10L	14,641,781	36.4	36.5	90.9	85.7	173	16,483	14,833	70.6
		EW12L	11,740,806	36.9	36.8	91.1	85.8	191	16,506	15,448	73.5
		EW13L	12,466,171	36.9	36.9	90.9	85.4	191	16,572	14,935	71.1
		Mean	12,749,353.0	36.68	36.70	91.15	85.93	181.8	16,354.5	15,005.0	71.4
	AFB	EW1L	11,719,049	36.9	37.0	89.7	83.6	192	17,914	17,073	81.3
		EW2L	12,615,195	36.9	37.0	90.1	84.2	191	17,911	16,523	78.6
		EW3L	12,625,962	36.9	36.9	90.5	84.7	192	18,026	17,194	81.8
		EW4L	12,468,136	36.9	36.9	89.9	84.0	193	18,054	17,230	82.0
		Mean	12,357,085.5	36.90	36.95	90.05	84.13	192.0	17,976.3	17,005.0	80.9
Domesticated	CNTL	N11L	12,448,496	36.7	36.8	92.4	87.7	172	15,993	14,837	70.6
		N12L	12,857,795	36.7	36.7	92.3	87.7	172	16,136	14,399	68.5
		N13L	11,417,338	37.2	37.4	91.4	85.7	212	16,634	15,584	74.2
		N14L	12,099,335	36.7	36.6	91.9	87.0	170	15,952	14,780	70.4
		Mean	12,205,741.0	36.83	36.88	92.00	87.03	181.5	16,178.7	14,900.0	70.9
	AFB	N1L	11,388,753	37.2	37.4	90.3	84.3	212	17,967	17,109	81.4
		N2L	12,827,964	37.1	37.3	89.8	83.6	213	18,083	16,752	79.7
		N3L	10,821,683	37.1	37.3	90.4	84.4	211	17,903	17,048	81.1
		N4L	11,144,371	37.2	37.3	90.1	84.0	211	17,989	17,119	81.5
		Mean	11,545,693.0	37.15	37.33	90.15	84.08	211.8	17,985.5	17,007.0	81.0
Mean			12,214,468.06	36.89	36.96	90.84	85.29	191.75	17,123.75	15,979.25	76.1

For each library the total number of concatenated reads, median read qualities (R1 and R2), estimated mean insert length (bp), number of and percentage of aligned reads, percentage of concordant reads, and the number and percentage of observed genes (mapped reads > 1) and expressed genes (mean group normalized read count > 3.0) are given.