Table 2.
Summary of genes with significant differential expression (DE) in pair-wise comparisons of treatment groups.
Comparison | Groups | Expressed Genes | Shared Genes | Unique Genes/Group | FDR Pval < 0.05 | |log2FC| > 1.0 | |log2FC| > 2.0 |
---|---|---|---|---|---|---|---|
AFB1 effect | EW (AFB vs. CNTL) | 17,342 | 14,908 | 2147/287 | 9620 | 7168 | 4176 |
DT (AFB vs. CNTL) | 17,403 | 14,669 | 2407/328 | 11,325 | 8001 | 4621 | |
Line | CNTL (EW vs. DT) | 15,525 | 14,667 | 528/330 | 744 | 495 | 184 |
AFB (EW vs. DT) | 17,411 | 16,719 | 336/356 | 903 | 456 | 143 |
For each comparison, the treatment groups, number of genes with significant FDR p-value, and the numbers of significant genes that also had |log2 fold change| > 1.0 and > 2.0 are given.