Table 2.
Overall assembly statistics for the D. sinicus transcriptomes.
| BC5 | BC15 | BC30 | SC5 | SC15 | SC30 | |
|---|---|---|---|---|---|---|
| Number of raw reads | 58,731,962 | 65,460,126 | 59,431,136 | 54,367,904 | 56,408,792 | 57,867,298 |
| Number of clean reads (%) | 56,597,392 (96.37%) |
63,275,200 (96.66%) |
57,515,272 (96.78%) |
53,084,380 (97.64%) |
55,287,738 (98.01%) |
54,692,784 (94.51%) |
| Q20 (%) | 97.29 | 97.49 | 97.4 | 97.29 | 97.40 | 97.63 |
| Mapped reads (%) | 39,026,306 (68.95%) |
44,519,052 (70.36%) |
39,786,978 (69.18%) |
36,775,186 (69.28%) |
39,279,750 (71.05%) |
37,541,394 (68.64%) |
| GC (%) | 52.01 | 52.31 | 54.27 | 53.44 | 54.07 | 51.24 |
Q20 (sequencing base calls with an error rate of less than 1%); BC5 (5 day old bent culm); BC15 (15 day old bent culm); BC30 (30 day old bent culm); SC5 (5 day old straight culm); SC15 (15 day old straight culm); SC30 (30 day old straight culm).