Table 2. The number of genes tested in PrediXcan using expression prediction models built in GTEx Project tissues.
Genes tested had a cross-validated prediction performance R2 > 0.01.
| Tissue model | Tissue abbreviation | Genes tested | Tissue model | Tissue abbreviation | Genes tested |
|---|---|---|---|---|---|
| Adipose—Subcutaneous | ADPSBQ | 7,254 | Esophagus—Mucosa | ESPMCS | 7,710 |
| Adipose—Visceral (Omentum) | ADPVSC | 4,447 | Esophagus—Muscularis | ESPMSL | 6,338 |
| Adrenal Gland | ADRNLG | 3,785 | Heart—Atrial Appendage | HRTAA | 4,450 |
| Artery—Aorta | ARTAORT | 5,943 | Heart—Left Ventricle | HRTLV | 4,718 |
| Artery—Coronary | ARTCRN | 3,141 | Liver | LIVER | 2,502 |
| Artery—Tibial | ARTTBL | 7,074 | Lung | LUNG | 6,448 |
| Brain—Anterior cingulate cortex (BA24) | BRNACC | 2,430 | Muscle—Skeletal | MSCLSK | 6,520 |
| Brain—Caudate (basal ganglia) | BRNCDT | 3,325 | Nerve—Tibial | NERVET | 8,016 |
| Brain—Cerebellar hemisphere | BRNCHB | 4,077 | Ovary | OVARY | 2,673 |
| Brain—Cerebellum | BRNCHA | 5,066 | Pancreas | PNCREAS | 4,603 |
| Brain—Cortex | BRNCTXA | 3,334 | Pituitary | PTTARY | 3,094 |
| Brain—Frontal Cortex (BA9) | BRNCTXB | 3,138 | Prostate | PRSTTE | 2,491 |
| Brain—Hippocampus | BRNHPP | 2,508 | Skin—Not Sun Exposed (Suprapubic) | SKINNS | 5,471 |
| Brain—Hypothalamus | BRNHPT | 2,290 | Skin—Sun Exposed (Lower leg) | SKINS | 7,665 |
| Brain—Nucleus accumbens (basal ganglia) | BRNNCC | 2,984 | Small Intestine—Terminal Ileum | SNTTRM | 2,515 |
| Brain—Putamen (basal ganglia) | BRNPTM | 2,621 | Spleen | SPLEEN | 3,602 |
| Breast—Mammary Tissue | BREAST | 4,473 | Stomach | STMACH | 4,035 |
| Cells—EBV-transformed lymphocytes | LCL | 3,441 | Testis | TESTIS | 7,002 |
| Cells—Transformed fibroblasts | FIBRBLS | 7,543 | Thyroid | THYROID | 7,853 |
| Colon—Sigmoid | CLNSGM | 3,619 | Uterus | UTERUS | 2,058 |
| Colon—Transverse | CLNTRN | 4,729 | Vagina | VAGINA | 1,939 |
| Esophagus—Gastroesophageal Junction | ESPGEJ | 3,457 | Whole Blood | WHLBLD | 6,588 |