Table 3. SNP-level GWAS results in the Yoruba (Y) and Cebu (C) populations.

Shown are SNPs that reach genome-wide significance after conditional and joint analysis (Yang et al., 2011; Yang et al., 2012).

Pop.	Pheno.	Chr.	Position	SNP ids	Nearest gene	Non- effect allele	Effect allele	EAF	Marginal Beta	Marginal P	Joint Beta	Joint P
Y	HDL	16	56995935	rs34065661	CETP	C	G	0.093	0.468	9.0 × 10−10	0.468	8.7 × 10−10
Y	LDL	19	45413233	rs1065853	APOE	G	T	0.113	−0.405	6.6 × 10−9	−0.405	6.4 × 10−9
C	TRIG	11	116663707	rs662799	APOA5	A	G	0.245	0.342	2.7 × 10−16	0.342	2.5 × 10−18
C	TRIG	2	27731212	rs3817588	GCKR	T	C	0.309	−0.202	2.6 × 10−7	−0.202	2.1 × 10−8