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. 2017 May 3;45(Web Server issue):W554–W559. doi: 10.1093/nar/gkx351

Figure 1.

Figure 1.

The workflow of CAFE. The JELLYFISH software parses the input sequence files (in Fasta format), counts k-mers and saves compressed information into separate databases. CAFE subsequently loads the databases and constructs a symmetric dissimilarity matrix among the inputs. CAFE also integrates four types of visualized downstream analysis, including dendrograms, heatmap, principal coordinate analysis (PCoA) and network display.