Skip to main content
. 2018 Jan 27;10(2):410–426. doi: 10.1093/gbe/evy003

Fig. 5.

Fig. 5.

—Differentially expressed miRNAs under low pH conditions. Nine miRNAs were found differentially expressed among the sampling sites (edgeR, FDR < 0.05). This included two miRNAs detected in all pH conditions studied (avi-miR-temp-13 and 29) and seven miRNAs that could be detected in only one or two different pH conditions. Five miRNAs were differentially expressed between pH 7.6 and 7.9, three downregulated (avi-miR-temp-52, 58, and 59) and two upregulated (avi-miR-temp-48 and 60) at pH 7.6 compared with pH 7.9. Only one miRNA was detected differentially expressed between pH 7.6 and 8.2 (avi-miR-temp-37), and it was upregulated at pH 7.6 compared with pH 8.2. Eight miRNAs were found differentially expressed between pH 7.9 and 8.2, three downregulated (avi-miR-temp-13, 29, and 48) and five upregulated (avi-miR-temp-37, 52, 56, 58, and 59) at pH 7.9 compared with pH 8.2. Differentially expressed miRNAs were hierarchically clustered into heatmap based on counts per million (cpm) and scaled by row.