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. 2018 Jan 27;10(2):410–426. doi: 10.1093/gbe/evy003

Table 3.

The List of 70 Predicted miRNAs in Anemonia viridis from Various pH Conditions

Temporary miRNA Name Mature Sequence Length Stem–Loop Lengtha Present in Condition Similarity to Known miRNAs
avi-miR-temp-100 acccguagauccgaacuugugg 22 56 All nve-miR-100-5p
avi-miR-temp-2022 uuugcuaguugcuuuugucccgc 23 52; 53 All nve-miR-2022-3p
avi-miR-temp-2023 aaagaaguacaagugguaggg 21 53 All nve-miR-2023-3p
avi-miR-temp-2025 uuuuuuagcccgcggaaguugu 22 53 All nve-miR-2025-3p
avi-miR-temp-2028 aaauguuccugcuuguuccug 21 48 All nve-miR-2028-5p
avi-miR-temp-2030 uagcauaacauaguaagagauu 22 52 All nve-miR-2030-5p
avi-miR-temp-2036 uauauuguacgacucucaucguag 24 54 All nve-miR-2036-3p
avi-miR-temp-2037 ugugauuggagacuuuuaucgu 22 54 All nve-miR-2037-3p
avi-miR-temp-1 gaucaagucaaauacaucucu 21 48 All
avi-miR-temp-2 uaucaaggcagucuuaccauau 22 54 All
avi-miR-temp-3 uacaaauguuacgcagcagaac 22 55 All
avi-miR-temp-4 ugacauugcugcccgaaucucc 22 88 All
avi-miR-temp-5 uuuaauguuacugcucguucc 21 53 All
avi-miR-temp-6 aauuucaaauauccacugauuga 23 55 All
avi-miR-temp-7 uugagcaucuguugcaugucua 22 53 All
avi-miR-temp-8 aucaucgccacuagcaucguca 22 55 All
avi-miR-temp-9 aagggcaagacaauagaauuuca 23 59 All
avi-miR-temp-10 cuugauaguacuuuugccuugc 22 52 pH 7.9, pH 8.2
avi-miR-temp-11 uaguagguucuuauaagcuauu 22 55 All
avi-miR-temp-12 uauaagucuaggcugguuaaga 22 56 All
avi-miR-temp-13 auacugaacuugaaagaagugau 23 55 All
avi-miR-temp-14 aaacgcuguucuugguaguca 21 55 All
avi-miR-temp-15 uaacaaagcaguuuggcuguau 22 55 All
avi-miR-temp-16 ucuggcugauuugaagaaaga 21 51 All
avi-miR-temp-17 acaucaaacaaagcaguuug 20 53 All
avi-miR-temp-18 auuacccguaaauaaauucaau 22 54 All
avi-miR-temp-19 aaccccaacgcgggccucugg 21 51 All
avi-miR-temp-20 uuaguuugcacucauuugcugg 22 55 All
avi-miR-temp-21 auuacccagaauggggccuuu 21 55 All
avi-miR-temp-22 uauucuccaaaaauucacaagg 22 52 All
avi-miR-temp-23 uaaacuaguugauaggauugu 21 51 All
avi-miR-temp-24 acagauugcggcaaccgugcag 22 72; 88 All
avi-miR-temp-25 ucaaauguugcgcagcagaac 21 55 All
avi-miR-temp-26 ugcugcaguuuagacugaccuc 22 53 All
avi-miR-temp-27 uccucaaguuuugauuguaauac 23 51; 52 All
avi-miR-temp-28 uucuuaaguuuugauuguaauac 23 52 All
avi-miR-temp-29 aucuacugauacuaaguauccg 22 54 All
avi-miR-temp-30 uuucuguaguacuuuauccuggc 23 54 All
avi-miR-temp-31 uauucaaucagucuggcuguua 22 52 All
avi-miR-temp-32 ucuuuugauaaauaccaccaaca 23 56 All
avi-miR-temp-33 uacucugaaguguacuuagugu 22 53; 54 All
avi-miR-temp-34 gauaugauauaauauguaugug 22 57 All
avi-miR-temp-35 uauacauauuuaguaucgauaucag 25 57; 58 All
avi-miR-temp-36 uaaauacacaauaucuauagcagu 24 55 All
avi-miR-temp-37 uaugguagugauguuuagaaa 21 49 pH 7.6, pH 7.9
avi-miR-temp-38 ccggacaaugagaauagcuga 21 56 All
avi-miR-temp-39 ugaucaauaaaagaaacaucguu 23 54 All
avi-miR-temp-42 uaucacauuuaaaacacucaug 22 53 All
avi-miR-temp-43 ucauacgauauuuuucacuagu 22 55; 56 All
avi-miR-temp-44 aaccucaugucagagaucaaa 21 53 pH 7.6, pH 8.2
avi-miR-temp-45 acagagccuccuuuaaccuccu 22 60 pH 7.6, pH 8.2
avi-miR-temp-47 ugguagaacaaguaacuugcugc 23 55 pH 7.6, pH 8.2
avi-miR-temp-48 gaaaaagacauuuagagacuug 22 56 pH 7.6
avi-miR-temp-49 aaugucaccaaguuucgacca 21 50 pH 7.6, pH 8.2
avi-miR-temp-50 aggcccuggggaaacaaugga 21 54 pH 7.6, pH 7.9
avi-miR-temp-52 uggaugcucaauuugccaauugc 23 75 pH 7.9, pH 8.2
avi-miR-temp-53 aacuuaaaacaaaaaucucccu 22 53 pH 7.6, pH 8.2
avi-miR-temp-54-1 aucuauucacugugggcguccagu 24 54 All
avi-miR-temp-54-2 aucuauucauugugggcguccagu 24 55 All
avi-miR-temp-55 uacuacuuugacaaugugaugg 22 53; 77 pH 7.6, pH 8.2
avi-miR-temp-56 aggucagucuaaacugcagca 21 54; 55 pH 7.6, pH 8.2
avi-miR-temp-57 gcuuugaaaauguaaagaaca 21 50 pH 7.6, pH 7.9
avi-miR-temp-58 ugcaguauucaguaugcacua 21 65 pH 7.9
avi-miR-temp-59 ucggcgccggucacgcgauaga 22 52 pH 7.9
avi-miR-temp-60 caagcuauaaauuccaacuga 21 50 pH 7.6
avi-miR-temp-61 ucgaguaaaauauuacagaaaug 23 54 pH 7.6, pH 8.2
avi-miR-temp-64 ucaucucuuguggcuugacauu 22 51 pH 7.6, pH 7.9
avi-miR-temp-65 uggugcaguuuagacugacccuu 23 54 pH 7.9
avi-miR-temp-66 cuagauuaugagagcuuaugu 21 53 All
avi-miR-temp-67 ugugugaaaacaugacaagaucu 23 50 All
a

Presence of two numbers in this column indicates that two different miRNA precursors (pre-miRNAs) of the same mature miRNAs have been detected in our genome assembly. All nucleotide sequences of mature and star miRNAs and pre-miRNA precursors are listed in supplementary table S2, Supplementary Material online.