TABLE 2.
Serovar-specific diagnostic SNPs in rpoB and ileS
| Salmonella serovar | Diagnostic SNPs in rpoB |
Diagnostic SNPs in ileS |
Total no. of diagnostic SNPs | ||
|---|---|---|---|---|---|
| No. | Position/SNP | No. | Position/SNP | ||
| Dublin | 4 | 750/T, 780/G, 3117/A, 3864/A | 3 | 1800/T, 1860/T, 2098/C | 7 |
| Typhimurium | 6 | 456/C, 459/T, 588/A, 2634/A, 2944/A, 3330/C | 1 | 1045/A | 7 |
| Gallinarum | 4 | 140/G, 973/T, 3112/A, 3757/T | 4 | 369/G, 426/T, 633/G, 2235/T | 8 |
| Montevideo | 9 | 684/T, 1212/A, 1380/A, 1560/A, 2836/T, 3261/T, 3645/T, 3900/C, 3906/T | 8 | 840/A, 918/T, 924/A, 1491/A, 1563/A, 1848/A, 1875/A, 2295/A | 17 |
| Newport | 4 | 984/T, 1500/G, 1680/A, 3987/A | 2 | 104/G, 2088/T | 6 |
| Kentucky | 4 | 594/T, 1608/T, 1755/T, 3207/C | 1 | 2116/A | 5 |
| Agona | 1 | 3531/C | 3 | 654/T, 2127/A, 2419/T | 4 |
| Anatum | 4 | 1617/T, 2347/T, 2403/A, 2631/A | 3 | 96/T, 1839/A, 2316/A | 7 |
| Meleagridis | 3 | 1203/A, 1500/T, 3783/A | 4 | 504/T, 537/T, 540/T, 875/A | 7 |
| Cerro | 8 | 1938/T, 2634/T, 2661/A, 3294/A, 3336/C, 3339/T, 3414/T, 3564/T | 15 | 273/A, 285/G, 609/T, 879/G, 972/T, 1014/T, 1017/T, 1041/A, 1050/T, 1059/C, 1254/C, 1506/C, 1683/C, 2181/A, 2376/A | 23 |
| Reading | 3 | 882/C, 909/T, 972/A | 0 | 3 | |