TABLE 2.
General features of novel bifidobacterial strains
| Strain | Average coverage (fold) | No. of contigs | Genome length (bp) | Average GC content (%) | No. of predicted ORFs | tRNA | rRNAa | 16S identity (%, species) | ITS identity (%, species) | ANI value (%, species) | GGDCb value (%, species) | Biological origin |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Rab10A | 104.3 | 72 | 2,276,351 | 65.45 | 1,825 | 52 | 4 | 98.36, B. choerinum | 87.2, B. choerinum | 91.8, B. choerinum | 41.30, B. choerinum | European rabbit |
| Ham19E | 108.6 | 44 | 2,155,882 | 62.53 | 1,733 | 53 | 4 | 97.32, B. choerinum | 68.6, B. animalis | 87.81, B. choerinum | 28.50, B. choerinum | European hamster |
| Goo31D | 115.4 | 9 | 2,166,761 | 64.3 | 1,681 | 52 | 4 | 97.65, B. choerinum | 84.7, B. choerinum | 91.47, B. choerinum | 39.30, B. choerinum | Domestic goose |
| Tam1G | 55.52 | 62 | 2,639,899 | 56.13 | 2,215 | 59 | 4 | 99, B. saguini | 89, B. saguini | 94.55, B. saguini | 55.20, B. saguini | Emperor tamarin |
| Tam10B | 138 | 68 | 3,111,005 | 62.46 | 2,522 | 60 | 4 | 96.4, B. tissieri | 72, B. hapali | 89, B. tissieri | 31.60, B. tissieri | Emperor tamarin |
| Uis1B | 66.93 | 80 | 2,789,387 | 61.91 | 2,281 | 60 | 3 | 96.2, B. tissieri | 65.7, B. biavatii | 88.04, B. hapali | 28.50, B. hapali | Pygmy marmoset |
| Uis4E | 139.27 | 44 | 2,820,211 | 65.81 | 2,247 | 62 | 6 | 96.8, B. stellenboschense | 81.3, B. stellenboschense | 93.45, B. stellenboschense | 50.20, B. stellenboschense | Pygmy marmoset |
a
Predicted number of rRNA loci.
b
GGDC, Genome-to-Genome Distance Calculator.