Table 5.
Expression of virus-entry and immune-related DEGs in gill tissues at one week post LCDV infection.
| Gene Name | Expression after Infection | Expression in Control | Ratio of Expression (Infection vs. Control) |
|---|---|---|---|
| β actin | 12,056 | 7655 | 1.575 |
| TLR3 | 38 | 4 | 9.500 |
| TLR14 | 409 | 1259 | 0.325 |
| interferon regulatory factor 2 | 286 | 138 | 2.072 |
| interferon regulatory factor | 15,252 | 9252 | 1.649 |
| interferon γ receptor α chain | 5521 | 3731 | 1.480 |
| interferon γ | 145 | 68 | 2.132 |
| interferon regulatory factor 8 | 355 | 223 | 1.592 |
| interleukin-8 receptor | 217 | 49 | 4.429 |
| interleukin-12 subunit β-like | 564 | 315 | 1.790 |
| Interleukin-15 | 413 | 242 | 1.707 |
| chemokine XC receptor 1-like | 589 | 216 | 2.727 |
| CC chemokine | 124 | 24 | 5.167 |
| C-C motif chemokine 3 precursor | 218 | 85 | 2.565 |
| CXC chemokine receptor 4 | 4244 | 2835 | 1.497 |
| CXC chemokine receptor 3 | 1009 | 634 | 1.591 |
| C-C motif chemokine 4 precursor | 284 | 158 | 1.797 |
| CXC chemokine | 1393 | 979 | 1.423 |
| chemokine XC receptor 1-like | 787 | 537 | 1.466 |
| C-X-C chemokine receptor type 4 protein | 166 | 90 | 1.844 |
| C-C motif chemokine 20 precursor | 111 | 361 | 0.307 |
| C-C motif chemokine 4-like | 26 | 115 | 0.226 |
| C-C chemokine receptor type 2-like | 82 | 207 | 0.396 |
| TNF ligand superfamily member 13B | 883 | 405 | 2.180 |
| TNF ligand superfamily member 6-like | 553 | 305 | 1.813 |
| TNF alpha-induced protein 2-like | 4776 | 2516 | 1.898 |
| TNF ligand superfamily member 14-like | 666 | 452 | 1.473 |
| TNF receptor-1 | 1186 | 3661 | 0.324 |
| TNF ligand superfamily member 13B | 883 | 405 | 2.180 |
| TNF ligand superfamily member 6-like | 553 | 305 | 1.813 |
| TNF ligand superfamily member 14-like | 666 | 452 | 1.473 |
| granulocyte colony-stimulating factor | 21 | 129 | 0.163 |
| perforin | 2053 | 1136 | 1.807 |
| natural killer enhancing factor | 1209 | 628 | 1.925 |
| bcl-2 | 402 | 641 | 0.627 |
| granzyme II | 3392 | 1213 | 2.796 |
| IgD | 47,080 | 19,068 | 2.469 |
| pIgR | 202 | 123 | 1.642 |
| ISG 15 | 2199 | 3851 | 0.571 |
| Mx | 932 | 2203 | 0.423 |
| antimicrobial peptide NK-lysin-like | 1361 | 372 | 3.659 |
| complement factor D | 16,310 | 8844 | 1.844 |
| complement component C3 | 123 | 61 | 2.016 |
| complement component C6-like | 197 | 57 | 3.456 |
| ubiquitin-conjugating enzyme E2 A | 352 | 221 | 1.593 |
| ubiquitin-conjugating enzyme E2 C-like | 340 | 142 | 2.394 |
| E3 ubiquitin-protein ligase CHFR-like | 2191 | 1409 | 1.555 |
| E3 ubiquitin-protein ligase RING2-like | 1023 | 701 | 1.459 |