Table 3.

RNA-Seq analysis of fish in response to parasites. This table shows a summary of investigations based on transcriptome analyses to understand parasitic diseases in various fish species.

Sl No	Fish	Parasite Species	Sample	Sequencing Platform	Sequencing Depth/Library	Accession Number	Reference
1	Large yellow croaker	Enteromyxum scophthalmi	Head kidney, spleen & pyloric caeca	Illumina HiSeq 2000	170 M	GSE63911	[107]
2	Three spined sticklebacks	Diplostomum pseudospathaceum	Head kidney & gills	Illumina HiScan SQ	486 M	PRJNA253091	[108]
3	_	Caligus rogercresseyi	Nauplius I, nauplius II, copepodid, chalimus, adult male & female	Illumina MiSeq	154.84 M	SRR1106551	[109]
4	Three-spined sticklebacks	Diplostomum pseudospathaceum	Head kidney & gills	Illumina HiScan SQ	990 M	PRJNA276419	[110]
5	Large yellow croaker	Cryptocaryon irritans	Liver	Illumina HiSeq 2000	Control: 51.9 M	NA	[111]
					Infected: 54.8 M
6	Turbot	Enteromyxum scophthalmi	Spleen, head kidney & pyloric caeca	Illumina HiSeq 2000	170 M	PRJNA300347	[112]
7	Large yellow croaker	Cryptocaryon irritans	Gill, skin, spleen, head kidney & liver	Illumina MiSeq	49.5 M	NA	[113]
8	_	Cryptocaryon irritans	Tomont stage	Illumina MiSeq	80.8 M	NA	[114]
9	_	Cryptocaryon irritans	Trophonts, tomonts, and theronts stages	Illumina HiSeq 2500	Trophonts: 79.35 M	SUB1416064	[115]
					Tomont: 66.42 M	SUB1416075
					Theronts:123.62 M	SUB1416142
10	Orange spotted grouper	Cryptocaryon irritans	Skin	Illumina HiSeq 2500	506.6 M	GSE97397	[116]

* Clean reads; NA—Not available; M—Million reads.