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. 2018 Jan 30;5:e3939. doi: 10.7717/peerj.3939

Table 2. List of differentially expressed proteins in the DENV2-infected HepG2 cell with YK51 treatment.

SSpot # Protein name (Gene symbols) Swiss-Prot accession Log normalized volume ± SDa Fold changeb Student’s t-test Distinct sum MS/MS scorec % Seq/ Matched peptidesd MW (kDa)/pIe
Infected, Untreated (n = 5) Infected, Treated (n = 5)
1 Retinal dehydrogenase 1 (AL1A1) P00352 6.64 ± 0.26 6.32 ± 0.20 −2.1 0.02 58.92 9/5 54.9/6.3
2 Retinal dehydrogenase 1 (AL1A1) P00352 6.98 ± 0.18 6.63 ± 0.29 −2.1 0.01 328.30 39/20 54.9/6.3
3 Interleukin enhancer-binding factor 2 (ILF2) Q12905 7.15 ± 0.18 6.79 ± 0.37 −2.0 0.03 134.79 27/10 44.7/5.2
4 Eukaryotic initiation factor 4A-I (eIF4A-1) P60842 6.57 ± 0.16 6.25 ± 0.24 −2.0 0.01 291.69 45/19 46.2/5.3
5 Proliferation-associated protein 2G4 (PA2G4) Q9UQ80 6.60 ± 0.19 6.26 ± 0.31 −2.0 0.02 77.32 13/4 43.8/6.1
6 Inosinicase (PUR9) P31939 6.73 ± 0.13 6.43 ± 0.19 −2.0 0.01 359.25 28/24 64.6/6.27
7 Alanine aminotransferase 2 (ALAT2) Q8TD30 6.97 ± 0.15 6.66 ± 0.25 −1.9 0.01 143.27 19/11 57.9/7.9
8 ATP synthase subunit beta (ATPB) P06576 6.53 ± 0.14 6.29 ± 0.11 −1.8 0.00 23.53 6/2 56.9/5.4
9 leucineaminopeptidase 3 (AMPL) P28838 6.54 ± 0.16 6.25 ± 0.32 −1.8 0.04 138.69 26/11 56.2/8.0
10 26S protease regulatory subunit 8 (PRS8) P62195 6.78 ± 0.22 6.53 ± 0.17 −1.8 0.03 55.22 13/5 45.6/7.11
11 Glucose-6-phosphate 1-dehydrogenase (G6PDH) P11413 6.91 ± 0.14 6.62 ± 0.25 −1.8 0.02 141.97 18/11 62.5/8.23
12 Protein disulfide-isomerase A6 (PDIA6) Q15084 7.48 ± 0.17 7.21 ± 0.17 −1.8 0.01 281.29 33/18 53.9/5.17
13 Elongation factor 2 (EF-2) P13639 6.54 ± 0.01 6.28 ± 0.21 −1.8 0.01 227 19/17 95.3/6.41
14 Protein disulfide-isomerase A3 (PDIA3) P30101 7.32 ± 0.15 7.10 ± 0.20 −1.7 0.03 314.27 40/21 56.8/5.99
15 ATP synthase subunit beta (ATPB) P06576 7.26 ± 0.17 7.04 ± 0.18 −1.7 0.03 270.75 41/15 56.6/5.26
16 Tubulin alpha-1B chain (TBA1B) P68363 7.28 ± 0.17 7.03 ± 0.27 −1.7 0.04 415.15 55/23 50.2/4.94
17 T-complex protein 1 subunit alpha (TCP1A) P17987 6.59 ± 0.01 6.33 ± 0.21 −1.7 0.01 66.01 8/4 60.3/5.8
18 Elongation factor Tu(EF-Tu) P49411 7.06 ± 0.17 6.82 ± 0.24 −1.7 0.04 356.83 48/21 49.9/7.26
19 Protein disulfide-isomerase A6 (PDIA6) Q15084 6.83 ± 0.12 6.62 ± 0.01 −1.7 0.00 28.31 7/2 48.1/4.95
20 Glutamate dehydrogenase 1 (GDH 1) P00367 7.24 ± 0.14 7.01 ± 0.17 −1.5 0.05 200.33 31/12 61.4/7.66
21 Annexin A5 (ANXA5) P08758 7.22 ± 0.01 7.03 ± 0.17 −1.5 0.02 224.97 39/14 35.9/4.94
22 Heat shock 70 kDa protein 9 (HSPA9) P38646 7.23 ± 0.01 7.04 ± 0.20 −1.5 0.03 197.84 24/21 73.9/6.04
23 26S proteasome non-ATPase regulatory subunit 7 (PSMD7) P51665 6.87 ± 0.01 6.70 ± 0.01 −1.5 0.00 59.57 19/5 37.0/6.29
24 Transaldolase, 1 (TALDO1) P37837 7.09 ± 0.10 6.90 ± 0.19 −1.5 0.03 25.11 5/2 37.5/6.36
25 Proteasome activator complex subunit 1 (PSME1) Q06323 7.30 ± 0.15 7.12 ± 0.12 −1.5 0.02 20.02 9/2 28.7/5.78
26 ATP-citrate synthase, isoform X1 (ACL) P53396 6.50 ± 0.12 6.33 ± 0.13 −1.5 0.02 133.61 8/9 12.6/8.40
27 biliverdin IX alpha reductase (BVR A) P53004 7.36 ± 0.01 7.19 ± 0.12 −1.5 0.01 39.14 9/3 33.5/5.91
28 Electron-transfer-flavoprotein, beta polypeptide (EFTB) P38117 7.30 ± 0.13 7.13 ± 0.10 −1.5 0.01 50.81 14/4 27.9/8.55
29 Actin-related protein 2/3 complex subunit 4 (p20-ARC) P59998 7.12 ± 0.12 6.94 ± 0.12 −1.5 0.01 49.75 22/4 19.7/8.54
30 Mitogen-activated protein kinase 1 (MAPK 1) P28482 7.07 ± 0.12 6.87 ± 0.19 −1.5 0.03 62.04 16/4 41.4/6.5

Notes.

a

Logarithm of normalized spot volume with standard deviation.

b

Negative sign (−) of fold change signifies decreased abundance of identified proteins compared to DENV2-infected HepG2 without YK51 treatment.

c

Sum of the z-scores from each distinct detected peptide in a same protein species.

d

Percentage of protein sequence coverage (% Seq) and number of distinct detected peptides.

e

Molecular weight of protein in kilo Dalton and isoelectric focusing point of a protein.