Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2018 Feb 1;19:30. doi: 10.1186/s12859-018-2041-5

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 3 — Workflow of using JSON-LD and BioThings API Registry to perform complex queries. By combining JSON-LD and BioThings API Registry, the Python function IdListHandler is able to select the API which is able to perform the task and automatically executes the queries to return the desired output. Users could easily get a list of drug candidates related to a rare Mendelian disease by the following path: HGVS ID → NCBI Gene ID → WikiPathways ID → NCBI Gene ID → UniProt ID → Drug InChI Key. It only requires the user to specify the input/output type at each step