Table 2.
Binding free energy (kJ mol−1) between PIP2 and important segments of TIRAP.
Complex groups | ΔvdWa | Δelecb | Δpsc | ΔSASAd | ΔGTotale |
---|---|---|---|---|---|
TIRAP–PIP2 | −106.55 ± 23.89 | −5,751.17 ± 199.80 | 1,891.38 ± 152.91 | −24.81 ± 4.93 | −3,991.15 ± 144.81 |
TIRAP–DPPC–PIP2 | −1,079.77 ± 68.97 | −10,873.77 ± 417.45 | 12,598.60 ± 720.47 | −818.40 ± 15.78 | −173.35 ± 544.98 |
PBD–PIP2 | −97.04 ± 23.58 | −13,184.38 ± 200.68 | 1,901.96 ± 152.70 | −24.48 ± 2.99 | −11,403.95 ± 112.04 |
PBD–DPPC–PIP2 | −638.74 ± 59.82 | −17,010.45 ± 473.75 | 11,483.39 ± 964.11 | −783.69 ± 15.49 | −6,949.49 ± 892.27 |
PBM–PIP2 | −38.35 ± 15.11 | −9,535.25 ± 147.37 | 1,323.40 ± 107.40 | −13.64 ± 2.08 | −8,263.84 ± 99.65 |
PBM–DPPC–PIP2 | −269.17 ± 49.67 | −12,876.59 ± 329.12 | 6,142.39 ± 933.46 | −749.13 ± 14.85 | −7,752.50 ± 952.17 |
PBD_A–PIP2 | −35.89 ± 14.05 | −4,067.33 ± 70.63 | 940.48 ± 71.87 | −10.51 ± 1.80 | −3,173.26 ± 36.97 |
PBD_B–PIP2 | −54.62 ± 17.99 | −4,017.56 ± 155.16 | 884.35 ± 131.24 | −12.00 ± 2.40 | −3,199.84 ± 61.24 |
PBM_A–PIP2 | −11.72 ± 7.53 | −3,048.29 ± 58.05 | 617.80 ± 63.31 | −5.28 ± 1.49 | −2,447.49 ± 35.62 |
PBM_B–PIP2 | −25.05 ± 12.80 | −2,932.35 ± 102.40 | 715.32 ± 80.59 | −8.53 ± 1.62 | −2,250.61 ± 50.85 |
aVan der Waals energy.
bElectrostatic energy.
cPolar solvation energy.
dSolvent accessible surface area energy.
eTotal binding free energy.
DPCC, dipalmitoylphosphatidylcholine; PBD, phosphatidylinositol (PI)-binding domain; PBM, PI-binding motif; PIP2, PI 4,5-bisphosphate; TIRAP, toll/interleukin 1 receptor domain-containing adaptor protein.