Table 2.
Chloroplast genome gene content and functional classification in Byrsonima coccolobifolia Kunth and B. crassifolia (L.) Kunth.
| Gene group | Gene name | |||
|---|---|---|---|---|
| Ribosomal RNA genes | rrn4.5 | rrn5 | rrn16 | rrn23 |
| Transfer RNA genes | trnA-TGC * | trnC-CGA | trnD-GTC | trnE-TTC |
| trnF-GAA | trnfM-CAT | trnG-GCC* | trnG-TCC | |
| trnH-GTG | trnI-CAT * | trnK-UUU* | trnL-CAA | |
| trnL-TAA* | trnL-TAG | trnM-CAT | trnN-GTT | |
| trnP-GGG | trnP-TGG | trnQ-TTG | trnR-ACG | |
| trnR-TCT | trnS-GCT | trnS-GGA | trnS-TGA | |
| trnT-GGT | trnT-TGT | trnV-GAC | trnV-TAC* | |
| trnW-CCA | trnY-GTA | |||
| Small subunit of ribosome | rps2 | rps3 | rps4 | rps7 |
| rps8 | rps11 | rps12 * | rps14 | |
| rps15 | rps16* | rps18 | rps19 | |
| rps12_3end | ||||
| Large subunit of ribosome | rpl2 * | rpl14 | rpl16 | rpl20 |
| rpl22 | rpl23 | rpl32* | rpl33 | |
| rpl36 | ||||
| RNA polymerase subunits | rpoA | rpoB | rpoC1* | rpoC2 |
| NADH dehydrogenase | ndhA* | ndhB * | ndhC | ndhD |
| ndhE | ndhF | ndhG | ndhH | |
| ndhI | ndhJ | ndhK | ||
| Photosystem I | psaA | psaB | psaC | psaI |
| psaJ | ycf3* | |||
| Photosystem II | psbA | psbB | psbC | psbD |
| psbE | psbF | psbH | psbI | |
| psbJ | psbK | psbL | psbM | |
| psbN | psbT | psbZ | ||
| Cytochrome b/f complex | petA | petB | petD | petG |
| petL | petN | |||
| ATP synthase | atpA | atpB | atpE | atpF* |
| atpH | atpI | |||
| Large subunit of rubisco | rbcL | |||
| Maturase | matK | |||
| Protease | clpP* | |||
| Envelope membrane protein | cemA | |||
| Subunit of acetyl-CoA-carboxylase | accD | |||
| c-type cytochrome synthesis | ccsA | |||
| Component of TIC complex | ycf1 | ycf1 Ψ | ||
| Hypothetical chloroplast reading frames | ycf2 | |||
| ORFs | orf42 | orf56 * | ycf 4 | ycf15 * |
| ycf68 * | ||||
*Genes containing introns; ΨPseudogene; genes in bold are located within the IR and therefore are duplicated.