Table 4.
Whole-genome resequencing of 14 soybean cultivars by Illumina sequencing.
| Genotype sample | Clean base (Gb) | Number of clean reads | Mapping rate (%) | 5× Genome Coverage Rate (%) | Mean Depth (×) |
|---|---|---|---|---|---|
| Zaoshu 18 (RpsZS18) | 20.05 | 69954259 | 99.22 | 93.53 | 17 |
| Williams(rps) | 24.51 | 85152854 | 99.28 | 96.59 | 21 |
| Zhonghuang13 | 25.07 | 99506075 | 95.42 | 95.42 | 22 |
| Zhonghuang47 | 24.33 | 96549570 | 99.16 | 96.73 | 21 |
| Jikedou2 | 26.7 | 106902333 | 99.34 | 96.56 | 20 |
| Harlon (Rps1a) | 21.6 | 144223638 | 98.17 | 97.34 | 22 |
| Harosoy13XX (Rps1b) | 21.8 | 145408800 | 97.65 | 95.22 | 22 |
| Williams79 (Rps1c) | 21.4 | 142931318 | 97.08 | 95.48 | 22 |
| PI103091 (Rps1d) | 21.5 | 143049326 | 97.07 | 96.21 | 22 |
| Harosoy (Rps7) | 20.3 | 135309736 | 97.66 | 95.22 | 21 |
| Ludou4 (Rps9) | 20.95 | 139679198 | 96.82 | 93.07 | 21 |
| Yudou25 (RpsYD25) | 21.15 | 83937297 | 99.08 | 95.08 | 18 |
| Youbian30 (RpsYB30) | 20.99 | 74149056 | 98.9 | 95.84 | 19 |
| Wandou15 (Rps10) | 22.77 | 79452816 | 99.04 | 95.91 | 20 |