Table 3.
Genera >1% relative abundance (rounded) in metatranscriptomes at any depth with classification and top genome bins.
| Genus | m (%) | Phylum | Class; Order; Family | Dominant Bin (or # of bins) | ||||
|---|---|---|---|---|---|---|---|---|
| 10 | 15 | 18 | 25 | 31 | ||||
| Ilumatobacter | 1 | 0 | 0 | 0 | 0 | Actinobacteria | Actinobacteria; Acidimicrobiales; Acidimicrobiaceae | Ilumatobacter coccineum YM16-304 |
| Leifsonia | 1 | 0 | 0 | 0 | 0 | Actinobacteria | Actinobacteria; Actinomycetales; Microbacteriaceae | 5 |
| Streptomyces | 1 | 0 | 0 | 0 | 0 | Actinobacteria | Actinobacteria; Actinomycetales; Streptomycetaceae | >10 |
| Anaerophaga | 0 | 0 | 0 | 0 | 1 | Bacteroidetes | Bacteroidia; Bacteroidales; Marinilabiliaceae | Anaerophaga thermohalophila Anaerophaga sp. HS1 |
| Fluviicola | 1 | 0 | 0 | 0 | 0 | Bacteroidetes | Flavobacteriia; Flavobacteriales; Cryomorphaceae | Fluviicola taffensis DSM 16823 |
| Owenweeksia | 1 | 0 | 0 | 0 | 0 | Bacteroidetes | Flavobacteriia; Flavobacteriales; Cryomorphaceae | Owenweeksia hongkongensis DSM 17368 |
| Flavobacterium | 1 | 0 | 0 | 0 | 0 | Bacteroidetes | Flavobacteriia; Flavobacteriales; Flavobacteriaceae | >10 |
| Psychroflexus | 1 | 0 | 0 | 0 | 0 | Bacteroidetes | Flavobacteriia; Flavobacteriales; Flavobacteriaceae | Psychroflexus gondawanenis Psychroflexus torquis Psychroflexus tropicus |
| Pelodictyon | 0 | 0 | 0 | 0 | 1 | Chlorobi | Chlorobia; Chlorobiales; Chlorobiaceae | Chlorobium luteolum DSM 273 Pelodictyon phaeoclathratiforme BU-1 |
| Cyanobium | 3 | 0 | 0 | 0 | 0 | Cyanobacteria | unclassified; Chroococcales; unclassified | Cyanobium sp. PCC 7001 Cyanobium gracile PCC 6307 |
| Synechococcus | 2 | 0 | 0 | 0 | 0 | Cyanobacteria | unclassified; Chroococcales; unclassified | >10 |
| Trichodesmium | 1 | 1 | 1 | 3 | 4 | Cyanobacteria | unclassified; Oscillatoriales; unclassified | Trichodesmium erythraeum IMS101 |
| Bacillus | 1 | 1 | 2 | 1 | 1 | Firmicutes | Bacilli; Bacillales; Bacillaceae | >10 including Bacillus thuringiensis Bacillus selenitireducens MLS10 Bacillus smithii Bacillus cellulosilyticus |
| Paenibacillus | 0 | 0 | 1 | 1 | 1 | Firmicutes | Bacilli; Bacillales; Paenibacillaceae | >10 |
| Staphylococcus | 0 | 0 | 0 | 0 | 1 | Firmicutes | Bacilli; Bacillales; Staphylococcaceae | Staphylococcus hominis and others |
| Enterococcus | 1 | 1 | 1 | 0 | 0 | Firmicutes | Bacilli; Lactobacillales; Enterococcaceae | Enterococcus faecalis Enterococcus faecium and others |
| Alkaliphilus | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Clostridiales; Clostridiaceae | Alkaliphilus metalliredigens QYMF Alkaliphilus oremlandii OhILAs |
| Clostridium | 1 | 4 | 5 | 4 | 4 | Firmicutes | Clostridia; Clostridiales; Clostridiaceae | Clostridium difficile Clostridium thermocellum Clostridium clariflavum Clostridium termitidis Clostridium papyrosolvens |
| Desulfosporosinus | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Clostridiales; Peptococcaceae | Desulfosporosinus orientis DSM 765 and 4 others |
| Desulfotomaculum | 0 | 1 | 2 | 2 | 2 | Firmicutes | Clostridia; Clostridiales; Peptococcaceae | 7 |
| Acetivibrio | 0 | 1 | 0 | 0 | 0 | Firmicutes | Clostridia; Clostridiales; Ruminococcaceae | Acetivibrio cellulolyticus |
| Dethiobacter | 0 | 2 | 5 | 5 | 5 | Firmicutes | Clostridia; Clostridiales; Syntrophomonadaceae | Dethiobacter alkaliphilus |
| Halanaerobium | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Halanaerobiales; Halanaerobiaceae | Halanaerobium hydrogeniformans Halanaerobium saccharolyticum Halanaerobium prevalens DSM 2228 |
| Halothermothrix | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Halanaerobiales; Halanaerobiaceae | Halothermothrix orenii H168 |
| Acetohalobium | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Halanaerobiales; Halobacteroidaceae | Acetohalobium arabaticum DSM 5501 |
| Natranaerobius | 0 | 0 | 1 | 1 | 1 | Firmicutes | Clostridia; Natranaerobiales; Natranaerobiaceae | Natranaerobius thermophilus |
| Rhodopirellula | 1 | 0 | 0 | 0 | 0 | Planctomycetes | Planctomycetia; Planctomycetales; Planctomycetaceae | 6 |
| Paracoccus | 0 | 1 | 0 | 0 | 0 | Proteobacteria | Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | 5 |
| Rhodobacter | 1 | 1 | 1 | 1 | 1 | Proteobacteria | Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | Rhodobacter sphaeroides Rhodobacter capsulatus Rhodobacter sp. CACIA14H1 |
| Roseobacter | 1 | 1 | 0 | 0 | 0 | Proteobacteria | Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | Roseobacter sp. AzwK-3b and 6 other species |
| Roseovarius | 1 | 1 | 0 | 0 | 0 | Proteobacteria | Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | Roseovarius sp. 217 Roseovarius sp. TM1035 Roseovarius nubinhibens |
| Ruegeria | 0 | 1 | 0 | 0 | 0 | Proteobacteria | Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae | 7 |
| Desulfatibacillum | 0 | 0 | 0 | 1 | 1 | Proteobacteria | Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae | Desulfatibacillum alkenivorans AK-01 |
| Desulfococcus | 0 | 0 | 0 | 1 | 2 | Proteobacteria | Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae | Desulfatibacillum multivorans Desulfatibacillum oleovorans Hxd3 |
| Desulfurivibrio | 0 | 1 | 2 | 0 | 0 | Proteobacteria | Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae | Desulfurivibrio alkaliphilus AHT2 |
| Desulfonatronospira | 0 | 0 | 0 | 1 | 1 | Proteobacteria | Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae | Desulfonatronospira thiodismutans |
| Desulfovibrio | 0 | 0 | 1 | 1 | 2 | Proteobacteria | Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae | >10 |
| Geobacter | 0 | 0 | 1 | 0 | 1 | Proteobacteria | Deltaproteobacteria; Desulfuromonadales; Geobacteraceae | 8 |
| Delta proteobacterium | 0 | 1 | 2 | 1 | 1 | Proteobacteria | Deltaproteobacteria; unclassified Deltaproteobacteria; unclassified Deltaproteobacteria | deltaproteobacterium MLMS-1 deltaproteobacterium NaphS2 |
| Marinobacter | 1 | 0 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Alteromonadales; Alteromonadaceae | 10 |
| Alkalilimnicola | 1 | 0 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae | Alkalilimnicola ehrlichii MLHE-1 |
| Spiribacter | 4 | 1 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae | Spiribacter salinus M19-40 |
| Thioalkalivibrio | 4 | 13 | 9 | 12 | 9 | Proteobacteria | Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae | Thioalkalivibrio nitratireducens Thioalkalivibrio sulfidophilus HL-EbGr7 Thioalkalivibrio sp. K90mix Thioalkalivibrio thiocyanodenitrificans and others |
| Escherichia | 2 | 2 | 2 | 1 | 1 | Proteobacteria | Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae | Escherichia coli strains |
| Methylomicrobium | 0 | 1 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Methylococcales; Methylococcaceae | Methylomicrobium alcaliphilum 20Z Methylomicrobium buryatense Methylomicrobium album |
| Halomonas | 2 | 1 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Oceanospirillales; Halomonadaceae | 14 |
| Pseudomonas | 1 | 1 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae | >10 |
| Thioalkalimicrobium | 0 | 14 | 9 | 6 | 5 | Proteobacteria | Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae | Thioalkalimicrobium cyclicum ALM1 |
| Thiomicrospira | 0 | 4 | 3 | 2 | 1 | Proteobacteria | Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae | Thiomicrospira crunogena XCL-2 Thiomicrospira arctica Thiomicrospira halophila |
| Gamma proteobacterium | 1 | 0 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; unclassified gammaproteobacteria; unclassified gammaproteobacteria | 9 |
| Vibrio | 1 | 1 | 0 | 0 | 0 | Proteobacteria | Gammaproteobacteria; Vibrionales; Vibrionaceae | Vibrio parahaemolyticus and others |
| Sphaerochaeta | 0 | 0 | 1 | 1 | 1 | Spirochaetes | Spirochaetia; Spirochaetales; Spirochaetaceae | Sphaerochaeta pleomorpha str. Grapes |
| Spirochaeta | 1 | 0 | 1 | 1 | 2 | Spirochaetes | Spirochaetia; Spirochaetales; Spirochaetaceae | Spirochaeta africana DSM 8902 Spirochaeta alkalica Spirochaeta smaragdinae DSM 11293 |
| Opitutaceae bacterium | 2 | 0 | 0 | 0 | 0 | Verrucomicrobia | Opitutae; Opitutales; Opitutaceae | Opitutaceae bacterium TAV1 |
| Opitutus | 2 | 0 | 0 | 0 | 0 | Verrucomicrobia | Opitutae; Opitutales; Opitutaceae | Opitutus terrae PB90-1 |
| Coraliomargarita | 2 | 1 | 0 | 0 | 0 | Verrucomicrobia | Opitutae; Puniceicoccales; Puniceicoccaceae | Coraliomargarita akajimensis DSM 45221 |
| Verrucomicrobiae bacterium | 2 | 0 | 0 | 0 | 0 | Verrucomicrobia | Verrucomicrobiae; Verrucomicrobiales; unclassified Verrucomicrobiales | Verrucomicrobiae bacterium DG1235 |
Abundances are shaded from low (blue) to high (red). Phylum colors correspond to the legend in Figure 2.