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—Our CNSpipeline to identify conserved sequences through genome comparisons. The steps include: (A) pairwise genome comparisons followed by masking and chaining; (B) merge pairwise alignments into multiple alignments; (C) calculation of conservation score of each base; (D) prediction of CNSs based on our criteria; (E) annotations of CNSs against various genomic elements including known motifs, microRNA, and lncRNA when possible.
