Skip to main content
. 2017 Dec 13;293(5):1504–1514. doi: 10.1074/jbc.RA117.000178

Table 1.

X-ray data collection and refinement statistics

Tne2tox –Tni2 (selenomethionine)
Data collection
    Beamline 21-ID-F
    Wavelength (Å) 0.979
    Space group C2
    Cell dimensions
        a, b, c (Å) 176.7, 40.6, 95.9
        α, β, γ (°) 90.0, 97.2, 90.0
    Resolution (Å) 68.94–1.71 (1.77–1.71)a
    Total no. of reflections 145,128
    Total no. of unique reflections 72,673
    Rmerge (%)b 5.4 (64.6)a
    II 13.8 (1.2)a
    Completeness (%) 98.7 (89.4)a
    Redundancy 2.0 (2.0)a

Refinement
    Rwork/Rfree (%)c 18.1/21.6
    No. of atoms
        Protein 4236
        Water 574
    Average B-factors (Å2)
        Protein 31.6
        Water 40.6
    r.m.s.d.
        Bond lengths (Å) 0.007
        Bond angles (°) 0.89
    Ramachandran plot (%)d
        Total favored 98.1
        Total allowed 100.0
    Coordinate error (Å)e 0.23

a Values in parentheses correspond to the highest resolution shell.

b Rmerge = Σ Σ |I(k) − 〈I〉|/Σ I(k), where I(k) and 〈I〉 represent the diffraction intensity values of the individual measurements and the corresponding mean values. The summation is over all unique measurements.

c Rwork = Σ ‖Fobs| − k|Fcalc‖/|Fobs|, where Fobs and Fcalc are the observed and calculated structure factors, respectively. Rfree is the sum extended over a subset of reflections (5%) excluded from all stages of the refinement.

d Data were calculated using MOLPROBITY (49).

e Maximum-likelihood based coordinate error was determined by PHENIX (50).