Table 1.
X-ray data collection and refinement statistics
Tne2tox –Tni2 (selenomethionine) | |
---|---|
Data collection | |
Beamline | 21-ID-F |
Wavelength (Å) | 0.979 |
Space group | C2 |
Cell dimensions | |
a, b, c (Å) | 176.7, 40.6, 95.9 |
α, β, γ (°) | 90.0, 97.2, 90.0 |
Resolution (Å) | 68.94–1.71 (1.77–1.71)a |
Total no. of reflections | 145,128 |
Total no. of unique reflections | 72,673 |
Rmerge (%)b | 5.4 (64.6)a |
I/σI | 13.8 (1.2)a |
Completeness (%) | 98.7 (89.4)a |
Redundancy | 2.0 (2.0)a |
Refinement | |
Rwork/Rfree (%)c | 18.1/21.6 |
No. of atoms | |
Protein | 4236 |
Water | 574 |
Average B-factors (Å2) | |
Protein | 31.6 |
Water | 40.6 |
r.m.s.d. | |
Bond lengths (Å) | 0.007 |
Bond angles (°) | 0.89 |
Ramachandran plot (%)d | |
Total favored | 98.1 |
Total allowed | 100.0 |
Coordinate error (Å)e | 0.23 |
a Values in parentheses correspond to the highest resolution shell.
b Rmerge = Σ Σ |I(k) − 〈I〉|/Σ I(k), where I(k) and 〈I〉 represent the diffraction intensity values of the individual measurements and the corresponding mean values. The summation is over all unique measurements.
c Rwork = Σ ‖Fobs| − k|Fcalc‖/|Fobs|, where Fobs and Fcalc are the observed and calculated structure factors, respectively. Rfree is the sum extended over a subset of reflections (5%) excluded from all stages of the refinement.
d Data were calculated using MOLPROBITY (49).
e Maximum-likelihood based coordinate error was determined by PHENIX (50).