Table 4. Pairwise comparison of bootstrap support (BP) for clades identified in three-gene (A–D) and complete plastome coding trees (E–H).

	A vs. E	B vs. F	C vs. G	D vs. H
Number of shared clades with maximum BP	119	103	116	103
Number of shared clades with BP >50% (≥10% higher) in the first of the two compared trees, and the range of the differences in BP for shared clades	6 (4), 2–29%	6 (2), 2–28%	6 (1), 1–14%	3 (0), 1–7%
Number of shared clades with BP >50% and higher (≥10% higher) in the second of the two compared trees, and the range of the differences in BP for shared clades	71 (26), 1–44%	91 (50), 1–47%	77 (38), 1–49%	86 (44), 1–49%
Number of clades with BP ≥70% in the first of the compared trees and <50% in the second of the compared trees	8	2	5	7
Number of clades with BP support <50% in the first of the compared trees and ≥70% in the second of the compared trees	34	31	30	31