Table 1. Clusters categorised based on over- or under-representation of the various serum and growth conditions.
A | ||||
Factor | Enrichment | Actual | Expected | P-value |
Cluster 1, n = 16 | ||||
HS | Positive | 16 | 4 | <0.001 |
FSC | Negative | 0 | 4 | <0.001 |
DMEM | Negative | 0 | 4 | <0.001 |
CS-FCS | Negative | 0 | 4 | <0.001 |
Cluster 2 n = 37 | ||||
FCS | Positive | 16 | 9.25 | <0.001 |
HS | Negative | 3 | 9.25 | <0.001 |
Cluster 3 n = 18 | ||||
No serum enrichment | ||||
Cluster 4 n = 13 | ||||
DMEM | Positive | 10 | 3.25 | <0.001 |
HS | Negative | 0 | 3.25 | <0.01 |
B | ||||
Cluster 1, n = 16 | ||||
No enrichment for treatment | ||||
Cluster 2 n = 37 | ||||
Control | Positive | 20 | 12.3 | <0.001 |
Vitamin D | Negative | 5 | 12.3 | <0.001 |
Cluster 3 n = 18 | ||||
Vitamin D | Positive | 18 | 6 | <0.001 |
Insulin | Negative | 0 | 6 | <0.001 |
Control | Negative | 0 | 6 | <0.001 |
Cluster 4 n = 13 | ||||
Insulin | Positive | 10 | 4.3 | <0.001 |
Vitamin D | Negative | 0 | 4.3 | <0.001 |
For each cluster the number of observations belonging to each category was calculated (‘Actual’) and was compared with the expected number of observations in each category if the observations would have been evenly distributed (‘Expected’) (i.e hypergeometrical distribution). P-values were calculated with fishers exact test (p-value). A) cover enrichment of serum-conditions in the different clusters B) concern enrichment of treatment conditions in the different clusters.