Table 4.
Analyses of repeat elements in Fagaceae plastid genomes.
| Location | Tandem repeats | Dispersed repeats | Palindromic repeats | All kinds of repeats | |||
|---|---|---|---|---|---|---|---|
| Number of different length repeats (10–20 bp/21–30 bp/31–40 bp/>40 bp) | Number of repeat bases/number of bases in the region | Number of different length repeats (30–40 bp/>40 bp) | Number of repeat bases/number of bases in the region | Number of different length repeats (30–40 bp/>40 bp) | Number of repeat bases/number of bases in the region | Number of repeat bases/number of bases in the region | |
| Complete plastid genomes | 145 (53/50/37/5) | 8,459/2,572,513 | 199 (198/1) | 12,832/2,572,513 | 96 (96/0) | 6,150/2,572,513 | 27,441/2,572,513 |
| LSC | 40 (20/12/4/4) | 2219/1,442,900 | 97 (97/0) | 6,081/1,442,900 | 33 (33/0) | 2,050/1,442,900 | 10,350/1,442,900 |
| SSC | 11 (3/6/1/1) | 634/304,443 | 21 (20/1) | 1,670/304,443 | 18 (18/0) | 1,090/304,443 | 3,394/304,443 |
| IR | 94 (30/32/32/0) | 5,606/825,170 | 81 (81/0) | 5,081/825,170 | 45 (45/0) | 3,010/825,170 | 13,697/825,170 |
| Intergenic spacer regions | 79 (25/17/33/4) | 4,451/828,186 | 95 (95/0) | 6,289/828,186 | 60 (60/0) | 4,094/828,186 | 14,834/828,186 |
| Introns | 28 (26/0/1/1) | 1,388/284,012 | 41 (40/1) | 2,849/284,012 | 20 (20/0) | 1,096/284,012 | 5,333/284,012 |
| Genes | 38 (2/33/3/0) | 2,620/1,460,315 | 63 (63/0) | 3,694/1,460,315 | 16 (16/0) | 960/1,460,315 | 6,714/1,460,315 |
Numbers of different length repeats are given in brackets.