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Sites and models in ML and BI analyses for each dataset.
| Dataset | Number of sites | Model in ML | Model in BI |
|---|---|---|---|
| 76 common protein-coding genes | 72,235 | GTR+G | GTR+I+G |
| Codon positions 1 + 2 | 48,176 | GTR+G | TVM+I+G |
| Codon position 3 | 24,353 | GTR+G | GTR+G |
| Gene expression | 18,856 | GTR+G | GTR+I+G |
| Photosynthetic apparatus | 16,970 | GTR+G | GTR+G |
| Photosynthetic metabolism | 18,817 | GTR+G | TVM+I+G |
| Miscellaneous | 3,786 | GTR+G | TVM+G |
| Unknown | 13,914 | GTR+G | GTR |
