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. 2018 Feb 5;217(2):541–553. doi: 10.1083/jcb.201707082

Table 1. Repetitive elements within the ASAR6 ∼29-kb critical region.

Repeat Chromosome 6 position (hg19) Length Transcribed strand
bp
LINE
L1PA2a 96,206,263–96,212,288 6,026 Minus
HAL1 96,215,594–96,215,921 328 Plus
L1MD2 96,215,920–96,216,230 311 Plus
HAL1 96,216,234–96,216,465 232 Plus
L3 96,218,080–96,218,188 109 Plus
L1MA1 96,223,585–96,223,754 170 Plus
L1PREC2 96,223,756–96,223,956 201 Plus
L1MA1 96,223,964–96,224,068 105 Plus
L1PA13 96,224,064–96,225,806 1,743 Plus
L1MC1 96,225,810–96,226,489 680 Plus
L1MC4 96,226,559–96,227,116 558 Plus
L1MC4 96,227,556–96,229,020 1,465 Plus
LINE total: 11,928 (40%)
SINE
MIRc 96,213,709–96,213,816 108 Minus
AluJb 96,227,186–96,227,475 290 Minus
AluSx 96,229,071–96,229,360 290 Minus
SINE total: 688 (2.3%)
LTR
HERVL74-int 96,216,904–96,217,915 1,012 Minus
HERVL74-int 96,217,938–96,218,078 141 Minus
MERV74A 96,218,220–96,218,674 455 Minus
MLT1A 96,222,658–96,222,737 80 Minus
THE1D 96,231,271–96,231,628 358 Plus
LTR total: 2,046 (6.9%)
DNA
MER1B 96,216,576–-96,216,899 324 Minus
Tigger3b 96,219,639–96,220,452 814 Minus
MER96B 96,222,553–96,222,642 90 Plus
DNA total: 1,228 (4.1%)
Total: 29,569 Repeat total: 15,890 (54%)

Repetitive elements were identified from Repeat Masker (http://www.repeatmasker.org). The chromosomal position, length in base pairs, and transcribed strand within ASAR6 are indicated.

a

Near full-length LINE critical for normal replication timing.