Table 1. Relative gene expression level in HAP1 cells of selected genes discussed in this work.
RPKM (Reads Per Kilobase of transcript per Million mapped reads) values from duplicate RNAseq datasets described previously (NCBI GEO accession number GSE75515, https://www.ncbi.nlm.nih.gov/geo/), obtained from two different passages of WT HAP1 cells (Dubey et al., 2016). Groups of paralogues or genes with redundant function are shaded in alternating colors to facilitate comparisons.
| Gene | RPKM | ||
|---|---|---|---|
| Replicate 1 | Replicate 2 | Average | |
| LGR4 | 160.61 | 174.69 | 167.65 |
| LGR5 | 0.02 | 0.00 | 0.01 |
| LGR6 | 0.02 | 0.00 | 0.01 |
| ZNRF3 | 30.9 | 33.3 | 32.1 |
| RNF43 | 0.12 | 0.08 | 0.1 |
| GPC1 | 49.55 | 47.53 | 48.54 |
| GPC2 | 4.17 | 4.79 | 4.48 |
| GPC3 | 170.22 | 144.37 | 157.29 |
| GPC4 | 209.39 | 229.86 | 219.63 |
| GPC5 | 0.1 | 0.1 | 0.1 |
| GPC6 | 13.88 | 14.90 | 14.39 |
| SDC1 | 51.37 | 47.88 | 49.63 |
| SDC2 | 11.42 | 9.2 | 10.31 |
| SDC3 | 43.58 | 50.64 | 47.11 |
| SDC4 | 8.16 | 8.21 | 8.18 |