Table 2.
The 18 predicted genes related to anthocyanin biosynthesis based on single-nucleotide polymorphism (SNP) variations with selective sweeps
| RAP-DB gene | Chr. | Start | End | Strand | nSNPa | ZHp | Description |
|---|---|---|---|---|---|---|---|
| Os04g0175600 | 4 | 5,161,947 | 5,167,404 | + | 22 | − 1.57 | Similar to 0-methyltransferase |
| Os04g0175900 | 4 | 5,178,491 | 5,186,485 | + | 36 | − 1.59 | Winged helix repressor domain |
| Os04g0176200 | 4 | 5,189,974 | 5,194,492 | – | 3 | − 1.57 | Similar to N-methyltransferase |
| Os04g0176300 | 4 | 5,210,111 | 5,216,557 | + | 48 | − 1.57 | Hypothetical protein |
| Os04g0176400 | 4 | 5,210,122 | 5,216,551 | – | 2 | − 1.57 | Similar to serine carboxypeptidase 1 |
| Os05g0338933 | 5 | 15,866,499 | 15,866,891 | + | 26 | − 1.58 | Proton-dependent oligopeptide transport |
| Os05g0339000 | 5 | 15,873,838 | 15,880,419 | – | 8 | − 1.58 | VHS domain-containing protein |
| Os05g0340000 | 5 | 15,931,964 | 15,933,657 | – | 4 | − 1.49 | Conserved hypothetical protein |
| Os10g0162856 | 10 | 4,226,902 | 4,229,142 | + | 30 | − 1.52 | Chalcone and stilbene synthases |
| Os10g0174751 | 10 | 5,198,971 | 5,204,584 | + | 2 | − 1.57 | Hypothetical protein |
| Os10g0175500 | 10 | 5,236,268 | 5,237,084 | + | 43 | − 1.59 | Hypothetical gene |
| Os10g0175700 | 10 | 5,237,690 | 5,245,182 | – | 17 | − 1.57 | Hypothetical protein |
| Os10g0175800 | 10 | 5,247,357 | 5,248,013 | + | 10 | − 1.57 | Similar to nodulin protein |
| Os10g0188100 | 10 | 6,079,970 | 6,087,844 | – | 2 | − 1.55 | Conserved hypothetical protein |
| Os10g0188275 | 10 | 6,103,102 | 6,109,882 | – | 3 | − 1.56 | Hypothetical protein |
| Os10g0188400 | 10 | 6,111,498 | 6,115,269 | + | 10 | − 1.56 | Similar to ACI13 |
| Os10g0188300 | 10 | 6,104,501 | 6,110,244 | + | 5 | − 1.56 | Similar to JHL05D22.13 protein |
| Os10g0188900 | 10 | 6,144,589 | 6,150,509 | + | 43 | − 1.65 | Conserved hypothetical protein |
aNumber of SNPs in the gene